BAC Information

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BAC

Clone NameMSMg01-272L23
Chromosome1 (Build37)
Map Location 179,906,545 - 179,906,862
singlet/doubletsinglet
Overlap genenone
Upstream geneSdccag8, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
Downstream geneEG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272L23.T7 (MSMg01no272_l23.b1)MSMg01-272L23.TJ (MSMg01no272_l23.g1)
ACCAG411944AG411945
length748758
length of high quality
(start - end)
324 (43 - 366)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no272_l23.b1 PHD_FILE: MSMg01no272_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005CHROMAT_FILE: MSMg01no272_l23.g1 PHD_FILE: MSMg01no272_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:58 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGACAAACTCAGTTGAATTTGAAGCCAGTATTGAAGAATAACATCC
AGTTTCACTAGTAGATCTTGAGACTGTCCATTTTCCATTTCAAAAGTGCC
AGCCACTCAAAGAGATAGCACAGCTTGAAATGCCAAGGGATCCCTTTTAA
TCTGCATGTCTTTAGTTGTGGAGTGACTTTTGTCAGTGATGACCACCAGC
TTGTATCTTCCCAGATGGAAAGGAAAGTGTTTGGTAAAGTCTTTGAAAAT
AGCTGCTCATGTTACCACTACTGTCTGTGTTTGATGGCAGTGATGGCTAT
AATCAACTCCCCTATTTTTAGTCGCCCCCCCCGCTGTTTTTAGAAGCAGA
TTTTTTCTTTGTAGTCTAGTCTTTGTTTGAAATCCCCATCCACTTGTGCT
GCCCGGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTCTCATTGGCTGATGCTCTGAAGGCC
CATTTTCTCTTTCGCTAGTCCTATCATCCCATTTTTCTTTCGTGTTGGTG
TTAAAAATGTTCTGACAACACTACAGGAAGGCATTCCTTCAGCTCATGAT
TCCTGTTTGCAGTCCGTCATTGTGGGGAAGCCAAGGCAGTAGGAATTTGA
AGCCGCCAGTAAAATCACATCTACGGCTAAAAGCAGAGACAGGATGAATA
CATACATACCTATGGTCAGCGCACTCTCCCTTCTCAATCAGTTCAAGACT
CAAATCTGAATGCTGTTACCCACTTTTACACTTGCTTGGTAATCATCCTA
ATCCTCTGCAGATATACCCAAGGGTTAAACTGACTTAAGCAATCCATCAT
TGAGAATCTTTTCTCAGATAAATCTTGATTGTGTCATTGGCCACTGAAAG
CAACTACCACACAAATACTGCAGTTGCTTCATCAAAGCCTGAAAGAAGTC
CCTAACTACAAGGGTTATGCCTTATTGTCTTTGTCATACTAAACTTCAGA
AAAGAAGGGAATTACATAGGTGTGTGCAACCTTAGGGGACTGTCATTTTA
AGGGCTACCATTAAGTAAAACTATATATGATAATTATTACCTATTATTAT
TTCTGCAAACAATAACATGTGTTTGGATCGTGTGTCCCTGGTAAAACATG
AAGTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_l23.b1 MSMg01no272_l23.b1 CHROMAT_FILE:
MSMg01no272_l23.b1 PHD_FILE: MSMg01no272_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:58 2005
         (324 letters)



>mm_chr1_179906341_179907064
          Length = 724

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgacaaactcagttgaatttgaagccagtattgaagaataacatccagtttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcactgacaaactcagttgaatttgaagccagtattgaagaataacatccagtttc 463

                                                                       
Query: 65  actagtagatcttgagactgtccattttccatttcaaaagtgccagccactcaaagagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 actagtagatcttgagactgtccattttccatttcaaaagtgccagccactcaaagagat 403

                                                                       
Query: 125 agcacagcttgaaatgccaagggatcccttttaatctgcatgtctttagttgtggagtga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 agcacagcttgaaatgccaagggatcccttttaatctgcatgtctttagttgtggagtga 343

                                                                       
Query: 185 cttttgtcagtgatgaccaccagcttgtatcttcccagatggaaaggaaagtgtttggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cttttgtcagtgatgaccaccagcttgtatcttcccagatggaaaggaaagtgtttggta 283

                                                                       
Query: 245 aagtctttgaaaatagctgctcatgttaccactactgtctgtgtttgatggcagtgatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagtctttgaaaatagctgctcatgttaccactactgtctgtgtttgatggcagtgatgg 223

                             
Query: 305 ctataatcaactccccta 322
           ||||||||||||||||||
Sbjct: 222 ctataatcaactccccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)