BAC Information

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BAC

Clone NameMSMg01-272O04
Chromosome1 (Build37)
Map Location 7,900,632 - 7,900,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272O04.T7 (MSMg01no272_o04.b1)MSMg01-272O04.TJ (MSMg01no272_o04.g1)
ACCAG412044AG412045
length748751
length of high quality
(start - end)
321 (45 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no272_o04.b1 PHD_FILE: MSMg01no272_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:08 2005CHROMAT_FILE: MSMg01no272_o04.g1 PHD_FILE: MSMg01no272_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTACTTGTCTAGTACTATGTCTGTATGAATGTCACCATGTTT
CCCTTCACAATGATGATGCACTAAACTTCTTAAGTGTAAGCTAGCCCCCA
ATTAAATGTTTTCCTTTATAAGCATTGCTGTGGTCATAGTTTTGCTTTAC
AGCAGAAGAAACACTAAGACACAGCACAAAGCAAAAACACTTCAGAAGTT
AATTAAGCTTGTTGAATTAGAAGCAGTATCCTTATCATACTGACTCAGCA
AAAGACATTTCTTTAGGAAACAGGTTTCCACATCACCATTTGTCTTAGCC
AGCGTTTCTATTGCTGTGATACCACACCCCCACCAAAAACAACTTAGAGA
GTAAAGTGTGTGTGTTTACCTTCTGTATCTCACACTCCACATCTTAGGTA
GGTCAGGGCAAAAACTCAATGCAGGAACCTGGAAACAAGAATTAAAGTAG
AGGCCATGGAGGAATGTTACTTATTGGATTATCCCTCATAGCTTGCTCAG
CCTGTACTCCTATATCACATAGGACTACTGGCCAGTACCACCCATACTGA
TCCTAGCCAGTCATCAATTAACAGGAGAAAGCCATGAAAGACTAATAGAC
TTTTGTTTTCTCCTTCTCAGAGGCTATCTTTGTTGGGCCATTTATCCCCA
GAAACTTCCTTTTCCAAAATCGCTTGCTTGTATCCACGCAATAAATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCCATACCTAAACATAGTAA
AAGCTATATACAGCAAACCAGTAGCCAACATTAAAGTAAGTAGAAGGAAA
CTTGAGGCAATTCTACTAAAATCAGGGACTAGAGGAAGCTGCCCAATGTC
TCCCTACCTATTCAATATAGTACTTGAAGTCCTAGCCAGAACAATTAGAC
AACAAAAGGAAGATAAAGGGATACAAATTGGTAAGAAAGTCAAAATATCA
CTATTTACAGATGATAGGATAGTATATTTAAGTGATCCCAAAAATTACAC
CTGAGACCTCCTAATTCTGATTAATAACTCCACCAAAGGGGCTGGATATA
AAAATCTACTCAAACAAATCAGTAACCTTCATATACTCAAATAAAGAGGC
TGAGAAAGAATTAGTCACAAATAATATAAAATACCTTGGTGTGATTCTAA
CCAAACAAGTGAAAGATATGTGTGACAAGAACTTCAAGTCTCTGAGGAAA
GAAACTAAAAAAACTCTCAGAATATGGAAAAAATCTCCCATGTTCATAGA
TTTGCAAGATTATTAGAGTAAAAATGGCTGTCTTGCAAAAAAAAAAAGCA
ATCTACAAATTCAATGCATTCCAATGCATCCAAAATTACAACTCAATTCT
TCGTAGTGTTGGAAAGAGCAATTTGCAAATACATTTGGAATAACACAAAA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_o04.b1 MSMg01no272_o04.b1 CHROMAT_FILE:
MSMg01no272_o04.b1 PHD_FILE: MSMg01no272_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:08 2005
         (321 letters)



>mm_chr1_7900429_7901149
          Length = 721

 Score =  522 bits (270), Expect = e-152
 Identities = 306/318 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagttacttgtctagtactatgtctgtatgaatgtcaccatgtttcccttca 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 ggaattctcagttacttgtctagtactatgtctgtatgaatgccaccatgtttcccttca 263

                                                                       
Query: 64  caatgatgatgcactaaacttcttaagtgtaagctagcccccaattaaatgttttccttt 123
           || |||  |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 cagtgacaatgcactaaacttcttaagtgtaagccagcccccaattaaatgttttccttt 323

                                                                       
Query: 124 ataagcattgctgtggtcatagttttgctttacagcagaagaaacactaagacacagcac 183
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 324 ataagcattgctgtggtcatagttttgctttagagcaaaagaaacactaagacacagcac 383

                                                                       
Query: 184 aaagcaaaaacacttcagaagttaattaagcttgttgaattagaagcagtatccttatca 243
           |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct: 384 aaagcaaaaacatttcagaagttaactaagcttgttgaagtagaagcagtgtccttatca 443

                                                                       
Query: 244 tactgactcagcaaaagacatttctttaggaaacaggtttccacatcaccatttgtctta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 tactgactcagcaaaagacatttctttaggaaacaggtttccacatcaccatttatctta 503

                             
Query: 304 gccagcgtttctattgct 321
           ||||||||||||||||||
Sbjct: 504 gccagcgtttctattgct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)