BAC Information

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BAC

Clone NameMSMg01-272P22
Chromosome1 (Build37)
Map Location 106,419,613 - 106,419,903
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383546
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985, Pign
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272P22.T7 (MSMg01no272_p22.b1)MSMg01-272P22.TJ (MSMg01no272_p22.g1)
ACCAG412123AG412124
length757752
length of high quality
(start - end)
318 (40 - 357)292 (71 - 362)
definitionCHROMAT_FILE: MSMg01no272_p22.b1 PHD_FILE: MSMg01no272_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:17 2005CHROMAT_FILE: MSMg01no272_p22.g1 PHD_FILE: MSMg01no272_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GAAGTCTTTATGACTGGGAGTCATCCCAGTAGGGAGTCTGGTAGTAGAGA
GAAGGCATTTCCTTTTGAGTGAGAGTAGAAGCTATCAATTATCTCTATCA
ACTTCCTGAGGATAAATTAATAACCAGAAATGGACAGCCAGGCCAGATCA
CCAGGTCATCATGACTTTAAACTAGGGGCTGAGCTCTGGGCCAGTGCCTG
AGTGGTGGGAGAATGGGTTAGCTAGGCCTAGGCTTTTTCAGCATGGAGAA
AGAAATCGTTTTGAAGAGTGAGAAAGATCTCATAAGCGGAAGATGTCCTA
GAATGAACTTGNCTGTATTGCCCCCCCCTGCGTCCCCAAGGACGCCAGAG
TGTGACTATGAGCTCAAGAGCCTTCCCTACCACCTCTGCAACCAAGGGTC
ATTTAAGGTGTCTAGGGGGAAGAAGCTTGCCAATTTACCTGAGTTTGGAT
GGAGTTATAGCAAGCCAATGGCTGGAAAGTACACGTGACAGTGGGAAATA
TGAACCTGCAAGTTTATAAATCTGAGTCATGGGAAATGTGAATCTGTGAG
TTTCTAAATCTGAGTCATGGCAACAAGTGATTTGTTTTATAAAGCCAAGG
ATATATTTTATAGGGTATAGTCAGGTATGGTAGGAGGAGTAGGCCCATGC
TGAGGCATCTCTCCCACCAAGGTACCAGCCATATGATGGATCTAGTATAG
AATATAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGAAAGGGGATATTCTTTATCTTACGCC
CTGTGGTTTCATATGAACAAGCTGTTCAGTTGGAGGAATGTAATCACAGT
GATAAAAGAAACAGGACAAATATCAAAACTCAGTTCTCTAGTCTCAGTGA
AAAGATAAAGAAAAAAATACCTTTGAAAAATTCAGCTTAAATATTTTGAG
AAGTAACAGATTTTTATAGATCAGTTGACATCAAGGAATCAAGGGAAAGA
AAACATTTTTTCCTCTTAGTGTAAAAGAAATGCTATTTACCTTTTTCTTG
GAAGGAACTCTTTCATGATTCTCCCCCCCCCCCCTATTGGCATCCATTGC
TAGAAAAAAGCTTGACATCACATGATTGAAACAAGAACACTGATATATTT
TCGATCACATCTCACAGTGAATTTTTCATCTCTTAAGCCTTTTCATTTTG
TTTACTCTTCAATACCGTCCTTATATGGATCCATTTAGTTATTCACGTGA
TGATTTCATCTTTGCTCCTAGTCAGGTTTTGAGGTTTTTTGTTTTGTTTT
GGTTTTGGGTTTGGTTTTGGGTTTGGTTCTGGTTCTGGTTCTGGTTCTGG
TTCTGGTTCTGATTTTGCTTTGGTTGCTTGTTTGCTTTAATTTTAATTAC
TAAAACAAAGCTGCATTGATGGTCAGCAAATCATTAAACTTTCATTGGTA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_p22.g1 MSMg01no272_p22.g1 CHROMAT_FILE:
MSMg01no272_p22.g1 PHD_FILE: MSMg01no272_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:17 2005
         (292 letters)



>mm_chr1_106419413_106420104
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 2/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagaaaggggatattctttatctt-acgccctgtggtttcatatgaacaagctgttcag 59
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 201 taagaaaggggatattctttatcttga-gccctgtggtttcatatgaacaagctgttcag 259

                                                                       
Query: 60  ttggaggaatgtaatcacagtgataaaagaaacaggacaaatatcaaaactcagttctct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttggaggaatgtaatcacagtgataaaagaaacaggacaaatatcaaaactcagttctct 319

                                                                       
Query: 120 agtctcagtgaaaagataaagaaaaaaatacctttgaaaaattcagcttaaatattttga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtctcagtgaaaagataaagaaaaaaatacctttgaaaaattcagcttaaatattttga 379

                                                                       
Query: 180 gaagtaacagatttttatagatcagttgacatcaaggaatcaagggaaagaaaacatttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaagtaacagatttttatagatcagttgacatcaaggaatcaagggaaagaaaacatttt 439

                                                               
Query: 240 ttcctcttagtgtaaaagaaatgctatttacctttttcttggaaggaactct 291
           |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcctcttagcgtaaaagaaatgctatttacctttttcttggaaggaactct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)