This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-273C19
Chromosome
1 (Build37)
Map Location
196,278,171 - 196,278,489
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC667208
Downstream gene
EG623172
,
Plxna2
,
Cd34
,
Cd46
,
Crry
,
Cr2
,
EG635956
,
LOC623380
Link
Open Mouse BAC browser
Click to get alignment info.
name
Camk1g
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:215303
MGI:2388073
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC667208
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667208
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
EG623172
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:623172
MGI:3648997
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs
name
Plxna2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18845
MGI:107684
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cd34
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12490
MGI:88329
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cd46
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17221
MGI:1203290
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Crry
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12946
MGI:88513
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cr2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12902
MGI:88489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG635956
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:635956
MGI:3644033
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
name
LOC623380
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:623380
definition
gene_synonym
: Feb06V2Rchr1-196.992
note
: vomeronasal 2 receptor pseudogene
pseudo
: _no_value
name
Camk1g
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:92110041
GeneID:215303
MGI:2388073
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: calcium/calmodulin-dependent protein kinase I gamma
transcript_id
: NM_144817.2
name
EG623172
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94364763
GeneID:623172
MGI:3648997
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs
product
: predicted gene, EG623172
transcript_id
: XM_897562.2
name
Plxna2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113722112
GeneID:18845
MGI:107684
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: plexin A2
transcript_id
: NM_008882.2
name
Cd34
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19526791
GeneID:12490
MGI:88329
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CD34 antigen
transcript_id
: NM_133654.1
name
Cd46
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142367650
GeneID:17221
MGI:1203290
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CD46 antigen, complement regulatory protein
transcript_id
: NM_010778.3
name
Crry
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:52426749
GeneID:12946
MGI:88513
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: complement receptor related protein
transcript_id
: NM_013499.2
name
Cr2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:114326525
GeneID:12902
MGI:88489
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: complement receptor 2
transcript_id
: NM_007758.2
name
EG635956
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149247498
GeneID:635956
MGI:3644033
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
product
: predicted gene, EG635956
transcript_id
: XM_001473480.1
name
EG623172
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94364764
GeneID:623172
MGI:3648997
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_902655.2
name
Plxna2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:113722113
GeneID:18845
MGI:107684
definition
codon_start
: 1
note
: plexin 2
product
: plexin A2
protein_id
: NP_032908.2
name
Cd34
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19526792
CCDS:CCDS15640.1
GeneID:12490
MGI:88329
definition
GO_component
: GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0050900 - leukocyte migration [Evidence IMP]
codon_start
: 1
note
: cluster designation 34
product
: CD34 antigen
protein_id
: NP_598415.1
name
Cd46
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754660
GeneID:17221
MGI:1203290
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_process
: GO:0007338 - fertilization (sensu Metazoa) [Evidence IEA]
codon_start
: 1
note
: membrane cofactor protein
product
: CD46 antigen, complement regulatory protein
protein_id
: NP_034908.1
name
Crry
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:52426750
CCDS:CCDS15641.1
GeneID:12946
MGI:88513
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]; GO:0045916 - negative regulation of complement activation [Evidence IMP]; GO:0007565 - pregnancy [Evidence IEA]; GO:0030449 - regulation of complement activation [Evidence TAS]
codon_start
: 1
product
: complement receptor related protein
protein_id
: NP_038527.2
name
Cr2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859474
CCDS:CCDS15642.1
GeneID:12902
MGI:88489
definition
GO_component
: GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004875 - complement receptor activity [Evidence IMP]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IDA]
GO_process
: GO:0042113 - B cell activation [Evidence IMP]; GO:0006958 - complement activation, classical pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA]
codon_start
: 1
note
: expressed in B lymphocytes; complement receptor type 1
product
: complement receptor 2
protein_id
: NP_031784.1
name
EG635956
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149247499
GeneID:635956
MGI:3644033
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001473530.1
name
LOC667208
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667208
definition
number
: 1
pseudo
: _no_value
name
LOC667208
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667208
definition
number
: 2
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:26211
definition
standard_name
: D12S345
name
(CDS detail)
type
STS
link
xref
UniSTS:128492
definition
standard_name
: D1Mit154
name
(CDS detail)
type
STS
link
xref
UniSTS:226537
definition
standard_name
: D13Rat161
name
(CDS detail)
type
STS
link
xref
UniSTS:116266
definition
standard_name
: D1Mit155
name
(CDS detail)
type
STS
link
xref
UniSTS:112548
definition
standard_name
: D13Got103
name
(CDS detail)
type
STS
link
xref
UniSTS:125464
definition
standard_name
: MHAa97e12.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:269978
definition
standard_name
: MARC_9713-9714:996688545:1
name
(CDS detail)
type
STS
link
xref
UniSTS:178558
definition
standard_name
: AW457381
name
(CDS detail)
type
STS
link
xref
UniSTS:234316
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:161780
definition
standard_name
: RH124958
name
(CDS detail)
type
STS
link
xref
UniSTS:238156
definition
standard_name
: Cd34
name
(CDS detail)
type
STS
link
xref
UniSTS:158909
definition
standard_name
: AU040960
name
(CDS detail)
type
STS
link
xref
UniSTS:160919
definition
standard_name
: RH118248
name
(CDS detail)
type
STS
link
xref
UniSTS:143844
definition
standard_name
: Mcp
name
(CDS detail)
type
STS
link
xref
UniSTS:207276
definition
standard_name
: BB228973
name
(CDS detail)
type
STS
link
xref
UniSTS:141405
definition
standard_name
: Crry
name
(CDS detail)
type
STS
link
xref
UniSTS:141392
definition
standard_name
: Cr2
clone name
MSMg01-377N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101F10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288P03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-437O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399H02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-095M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276P13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-267P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-532C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-179I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183P06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355J11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-097I24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-058O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395N04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-045B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-113M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052D16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092N20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-273C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-525E20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-369G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-160O01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-053K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-503F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-137J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-144H09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440M14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-483K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-318H04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325I16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513A23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-474M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197H22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-398N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-413D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196F17
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-196G17
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-233D16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-379J07
singlet/doublet
singlet
plural/unique
plural
clone name
B6Ng01-162K07
singlet/doublet
doublet
plural/unique
unique
clone name
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