BAC Information

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BAC

Clone NameMSMg01-273G15
Chromosome1 (Build37)
Map Location 76,825,845 - 76,826,200
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273G15.T7 (MSMg01no273_g15.b1)MSMg01-273G15.TJ (MSMg01no273_g15.g1)
ACCAG412422AG412423
length726730
length of high quality
(start - end)
356 (366 - 721)288 (69 - 356)
definitionCHROMAT_FILE: MSMg01no273_g15.b1 PHD_FILE: MSMg01no273_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:47 2005CHROMAT_FILE: MSMg01no273_g15.g1 PHD_FILE: MSMg01no273_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TTATTGACATGCATGGAGGAGTTTTAGCATTGGGCCCTGGACATCAACCA
ATGAAATTAGTCATCTCGAAAGGTAACTGAGGGTACTCTTGGCCTCAGGG
TTGCAAAAGTAGTTGTGTGTGCAAACGGATTACTGAACTAATTTTGGAAA
ATAATAACAATAGCTCTTGCTAACATTTATTGAATTCTAACTATGAATCA
TGCAATCAAAATTAATTTATGTTGTTTCATTTACCAGTATAACTTTATGT
GTTGGGAACTGTTATTGACATTTTATAGTTAAGGGGGAAAACTCTAGTCT
AGAGTATTCTAACAACTTACTTACACAACGCCATAGAAACCAAGCGCAGC
AAAGCTGAGATTTGAGTCACAGTTCCAACCTAGTTGGCCCTTATATCCTG
TCTTTTATGCTGTACCATCAAAGCAGACATATAAAGCCTGCACTACCCAA
ATGGAGTGAATGCAAGTCACAGAGGAAGAAGTTTATCTCTCCCTTTCTTC
TTTTGTATCCATACCCAGAGCCCAGAGAAAATCATGTACCCATGATTTCC
TGTGTTGACTTTCAGGGTCACCTCCTCTTGTCTTTCTTGGCATCTCTTCT
CTTCCATGTGAGTAACAGAATGGTGTAGCCTGCAGGCATGTAGGTGTGAG
ATCTTGTGAAGGATTGTGGGAGGTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCCAGGGGTATGTTCCCTGACCCCGGACAAC
ATGTGGAGACATTTTGATTTTAACAATCGGTCAGGAAGAGGCACATTGTT
GTTGGTATCTAGAGAGTGAAAGATACTGTTAAGAATTCTGCAGTGTATTA
GGTTTCTCTGCACCAAAGCCAACCTGACAACAAAGGACTATCAGGGCTCA
GAGGTTAATAGTGCCAACGGTAATCAAGTACCCCAAAACTGGGATATTAT
TTTTTGAGCAACAGCATCTTGGCATTCCTTTTCATAAAGATGTGTATTTG
TGGTTATCTTCTTTCACGCCCGCGCGCTTCCACTACCAAGTAAAATACAA
AGTTGACTGTCGGTTGGTTATTTTATGCCAAAGTTTAGTTTTAAAACTTT
TTCCAACTTGCCAGTACTTTTCTAGCCATGTTTTAACCCAGTGTTTTAAA
GCTCATGGAGCTGAATGCCTCTCCCTTCATTGCATCTTTAGACAATGAAC
TGATAAAGCCCAAAGTAAAATATCCAAGTAGTTATTTTTACCATATTGAG
GGTAGAATTATTAGCATTTTGAGTGCCCAAAGTTTCCTGTGTCAAGCACA
AGGCTGATATACTATAAATGATAACTACAGTGATGTCCTGTTATAGGAAT
GGGCCCTGAGAGAAGAATACACTAATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_g15.b1 MSMg01no273_g15.b1 CHROMAT_FILE:
MSMg01no273_g15.b1 PHD_FILE: MSMg01no273_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:47 2005
         (356 letters)



>mm_chr1_76825645_76826400
          Length = 756

 Score =  673 bits (348), Expect = 0.0
 Identities = 354/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacttacacaacgccatagaaaccaagcgcagcaaagctgagatttgagtcacagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 556 cttacttacacaacgccatagaaaccaagcgcagcaaagctgagatttgagtcacagatc 497

                                                                       
Query: 61  caacctagttggcccttatatcctgtcttttatgctgtaccatcaaagcagacatataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 caacctagttggcccttatatcctgtcttttatgctgtaccatcaaagcagacatataaa 437

                                                                       
Query: 121 gcctgcactacccaaatggagtgaatgcaagtcacagaggaagaagtttatctctccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcctgcactacccaaatggagtgaatgcaagtcacagaggaagaagtttatctctccctt 377

                                                                       
Query: 181 tcttcttttgtatccatacccagagcccagagaaaatcatgtacccatgatttcctgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcttcttttgtatccatacccagagcccagagaaaatcatgtacccatgatttcctgtgt 317

                                                                       
Query: 241 tgactttcagggtcacctcctcttgtctttcttggcatctcttctcttccatgtgagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgactttcagggtcacctcctcttgtctttcttggcatctcttctcttccatgtgagtaa 257

                                                                   
Query: 301 cagaatggtgtagcctgcaggcatgtaggtgtgagatcttgtgaaggattgtggga 356
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cagaatggtgaagcctgcaggcatgtaggtgtgagatcttgtgaaggattgtggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)