BAC Information

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BAC

Clone NameMSMg01-273H19
Chromosome1 (Build37)
Map Location 21,970,877 - 21,971,164
singlet/doubletsinglet
Overlap genenone
Upstream geneEfhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
Downstream geneLOC435612, LOC100040338, Rims1, Rims1, EG665725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273H19.T7 (MSMg01no273_h19.b1)MSMg01-273H19.TJ (MSMg01no273_h19.g1)
ACCAG412474AG412475
length749732
length of high quality
(start - end)
304 (72 - 375)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no273_h19.b1 PHD_FILE: MSMg01no273_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:52 2005CHROMAT_FILE: MSMg01no273_h19.g1 PHD_FILE: MSMg01no273_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGAGGCGCGGAATT
CAGTGTTCTTGACCCACAGGAAGAAGCTCTGTTTATAGCATTAGTCCTTA
GGACAAAAGGCATGCCACACCCCTATCAACTCTCCAGCTCTCTGGCTATA
TTTTGGTCAATATTTTGAGGTAATACCCAATAATGAATATTCTTACTGTG
ATATTTGCCAGTGGGCAACCTGCATTTTTGACTGAGAATTCTGTTTGAAT
TTGACTGTTATAATTGCTTCAGAAAAGCATGCTGAGTTTGATCTATATCC
ATACAAATATTAACTGATTTTTTATTATTTTATCAGGTTCTATTTCAGCC
TCCAATGATTTTTTTTTCCCCCCCCCCCCCCCGCCATTATCACAGACCTC
TCCCCCAATGCTATGTTATAGCTCCCAATAAAGAGCAGTAAGAGGAACAG
GGGGGTTATTGTGATATTGTGTGCCTTATAACTTGTACATAACTTATACT
CTCGATTTCTCATCATCATGACTGCTTATCCTATATCTTATTTGCTTTGA
TTTTTTTGTCTATCCTTTCCTTCTCTTTCCTTTAATTCCATTCAACTTTT
TCACTAATTCTTTTTACACCCGCCATTCCCTTATTTATTTCCCTCCTTTT
CGTCCATACTTTTATTTATATTTTTTCTTCTAGGATTCCCTATCTTCTAC
CTCGACTTCCCTCCTTTTCTCCCTTTACTCCCTTCCCTACCTTTTCACA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGACAGTACATTCTCACTGAGAATGTA
ACAATTACAGGAGGAAAAGTTACCAACCTCTAAAGGAGAATTCTGGCAGA
CACTGTCGTAAGCAAGTGGTAAGAGGTCCCAGTAATAATAAGACAAATGG
AATCGTGTGTCGGCCTATTAGACTTCAAGAGGATAAACACATTATCACTT
CTCTGGCTCTTCAAGAGAGAAGCAAATGCACCATGAGTAAGACAAGCTGT
ACTCATACAGAGGACGTTCTCTTTTTTTCAGGATCTGCATCTTCAACAGG
ATCGGGACAATGTTTTTTTGACCCNTTACAGACTGAGAGAAGCACAAACA
GATGGAGCAACTTATTCCAACACTTGACTTGAAACTGGATCTTTTTGCTC
TAAAGATTATTTAAATAATTGATTCACACACACGATCTGTACAATTACAT
GAAAATAATAAATTTGTGATCATTTTATGATATTCTTGGATTTTGGTAAT
GTAAGGTACTATCTTCATTTTTAATAAACATTAATTTGTGTATGTGGAGT
GATCCTTTTATTCTCATATACATGAGAAAAAGACCTTTGTTCTGTTTTTA
CAACTTTTCTCTATATTCAAAATTGCTTACATACACTTAATTTTTTTAAT
GCTCTGCTAGTTAGAAATATCAGTCTAGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_h19.b1 MSMg01no273_h19.b1 CHROMAT_FILE:
MSMg01no273_h19.b1 PHD_FILE: MSMg01no273_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:52 2005
         (304 letters)



>mm_chr1_21970677_21971380
          Length = 704

 Score =  472 bits (244), Expect = e-137
 Identities = 277/288 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagctctgtttatagcattagtccttaggacaaaaggcatgccacacccctatcaact 60
           |||||||||||| |||||||||||||||||||| ||||||||||||||   |||||||||
Sbjct: 201 agaagctctgttgatagcattagtccttaggaccaaaggcatgccacatttctatcaact 260

                                                                       
Query: 61  ctccagctctctggctatattttggtcaatattttgaggtaatacccaataatgaatatt 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccagctctctggctatactttggtcaatattttgaggtaatacccaataatgaatatt 320

                                                                       
Query: 121 cttactgtgatatttgccagtgggcaacctgcatttttgactgagaattctgtttgaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttactgtgatatttgccagtgggcaacctgcatttttgactgagaattctgtttgaatt 380

                                                                       
Query: 181 tgactgttataattgcttcagaaaagcatgctgagtttgatctatatccatacaaatatt 240
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 381 tgactgttataattgcttcagaaaagcacactgagtttgatctatatccatacaaatatt 440

                                                           
Query: 241 aactgattttttattattttatcaggttctatttcagcctccaatgat 288
           |||||||  || ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactgataattgattattttatcaggttctatttcagcctccaatgat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)