BAC Information

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BAC

Clone NameMSMg01-273P16
Chromosome1 (Build37)
Map Location 168,915,281 - 169,126,745
singlet/doubletdoublet
Overlap geneC030014K22Rik
Upstream genePou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102
Downstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879, Pbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273P16.T7 (MSMg01no273_p16.b1)MSMg01-273P16.TJ (MSMg01no273_p16.g1)
ACCAG412838AG412839
length718719
length of high quality
(start - end)
157 (436 - 592)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no273_p16.b1 PHD_FILE: MSMg01no273_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:27 2005CHROMAT_FILE: MSMg01no273_p16.g1 PHD_FILE: MSMg01no273_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,915,281 - 168,915,437)(169,126,460 - 169,126,745)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXNATTTCCGAGGGGGGCGGAATT
CCCAGCAATAGCACAAAAGAACTTGCCAGTCAGAGTGAGACTAAGTAGGC
AGCACGCAAAGATCTAAGGCCAAGGCGTCCTTCAGTCACACGAAGGCACC
GCCCATATTTAGGGTAGGTCTTCCCACTTCAAATAATCTGACCAAGAAAA
TCCCTCCCAGGAGTTCCCAGCTGTTAGTGCTTCAGGTGATTTCAGATGGG
TCTTGTTGACAACCAAAATTCACCATCACCAGCACCAGAGCCTGAGGACA
CAGCAGAGAATATTTATTTTTTTTTTGTGTAGCACTTACGAAATCTCCCA
CCTATGTCTTATTGGTTTCCCCANGCTGNCCCGAAATTATCACAAGGCTG
TTTGCAGCAGGGATGGAGGACCAGAAAGAAAAAGATAGTTGCTCAGAGAG
ATCTCTGCATTTGCGCTGTGTTTACCTCCCCCATTCCGTGTGTCTTCCCT
TCTTGAGAAAGAATTAGATTGGTTCAAGGACCCAGCACAAGCCCTCAGAA
AACCCATTCCCCTTTGCAAGATTTCTGTCTCTGTTCGGGGACTTTAATTC
TCCATTCTCCTCTGAATTTGTCTTCATGTCACTTCTCAGCACTTGAGCTC
TACTGTCTGTCATAATTGTTCCTACATCTTTATCCTAGAGTTGAAATCGA
TTCAGACTTGAACTCAAC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTGTATCTCTAGGGGAGCCATCAAAC
ATCAGAGGGGAGCTGAGACAGCCAGCTGGAATGCAACAACTCCGTGTTGG
GTGTTTCAGATTGAGGAGTCCCAGGCTTGTGCTCGGCGGCAGAAGCAGTA
AGGTGAAGCCTGTGGGACCCCCATCCTCATCACAAGGATTGGTTCTCAAA
GGGTGCCAGGGACCAGGAGCAGACATGTCACCCAGGCGCATTCGACAGCT
GCAGACTCAGGCTTCACACGACTGTCTCTGCATCAGGACCTGCTGGGTGG
GGCACTGATTTNGTGCNTTACCAANTCCTNNACGTAAGGNTGAGGAACAG
GAGCCACTGACCGACACCAGGTTTCTACATACACAAAGCTCTGACGCTCT
GGATGTGGATGAGTCTCGATGGTGAGCGGCCATCCTGTGCACCATTGACT
GTTAGCATCTCAGACTTCCCCCTAACAGCTGTCAGCAGCATCTTTCTTCC
AGCTGAGACAACCATTCAATCATTGCTGAGCATCCTCTGTGGAACAAAAA
TTGTCTGTTTCAGAACTATGAGTCTAGGCACTACTTCCTTCTAAAACAGC
CTACTATGGTCTAGTAGGGGCAGGGAGTTTTTGGATGACTCTTGGAGCCT
GCCCCAAATCTATTTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_p16.b1 MSMg01no273_p16.b1 CHROMAT_FILE:
MSMg01no273_p16.b1 PHD_FILE: MSMg01no273_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:27 2005
         (157 letters)



>mm_chr1_168915081_168915637
          Length = 557

 Score =  288 bits (149), Expect = 1e-82
 Identities = 155/157 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagttgctcagagagatctctgcatttgcgctgtgtttacctcccccattccgtgtgtct 60
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tagttgctcacagagatctctgcatttgtgctgtgtttacctcccccattccgtgtgtct 260

                                                                       
Query: 61  tcccttcttgagaaagaattagattggttcaaggacccagcacaagccctcagaaaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccttcttgagaaagaattagattggttcaaggacccagcacaagccctcagaaaaccc 320

                                                
Query: 121 attcccctttgcaagatttctgtctctgttcggggac 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcccctttgcaagatttctgtctctgttcggggac 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no273_p16.g1 MSMg01no273_p16.g1 CHROMAT_FILE:
MSMg01no273_p16.g1 PHD_FILE: MSMg01no273_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:27 2005
         (290 letters)



>mm_chr1_169126260_169126949
          Length = 690

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgtatctctaggggagccatcaaacatcagaggggagctgagacagccagctggaat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| 
Sbjct: 486 tgctgtatctctaggggagccatcaaacatcagaggggagcagagacagtcagctggaac 427

                                                                       
Query: 61  gcaacaactccgtgttgggtgtttcagattgaggagtcccaggcttgtgctcggcggcag 120
           ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 426 gcaacaactccatgttgggtgtttcagatttaggagtcccaggcttgtgctcggcggcag 367

                                                                       
Query: 121 aagcagtaaggtgaagcctgtgggacccccatcctcatcacaaggattggttctcaaagg 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagcagtaaggtgaagcctttgggacccccatcctcatcacaaggattggttctcaaagg 307

                                                                       
Query: 181 gtgccagggaccaggagcagacatgtcacccaggcgcattcgacagctgcagactcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 306 gtgccagggaccaggagcagacatgtcacccaggcgcattcgacagctgtagactcaggc 247

                                                         
Query: 241 ttcacacgactgtctctgcatcaggacctgctgggtggggcactga 286
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 246 ttcacacgacagtctctgcatcaggacctgctgggtggggcactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)