BAC Information

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BAC

Clone NameMSMg01-274A11
Chromosome1 (Build37)
Map Location 43,241,211 - 43,397,307
singlet/doubletdoublet
Overlap geneEG666642, EG666644
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2
Downstream geneLOC100041644, Nck2, 1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A11.T7 (MSMg01no274_a11.b1)MSMg01-274A11.TJ (MSMg01no274_a11.g1)
ACCAG412875AG412876
length736740
length of high quality
(start - end)
614 (120 - 733)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no274_a11.b1 PHD_FILE: MSMg01no274_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:30 2005CHROMAT_FILE: MSMg01no274_a11.g1 PHD_FILE: MSMg01no274_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,241,211 - 43,241,824)(43,397,036 - 43,397,307)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTAATTTTCCTTCCCAAGGCGAGGTTTCTTTCTGATTTTCTATTTTTTC
TAATGTATTTTATTTTCCTATTTGGAATACATTGGGCTGAATTCACGGAA
TTGATATGCTAATACTATGATTCCTGATATGCTAGGAAACTGTAGAAATT
CAAACGTTTTATGAAAACTCAAGTAAAGAAGGAGTGCTTATGAATCTTTG
GAGAGGACAGCAGAGATAAACGCACTCTAACTCAGGGCAATGTCATAAAA
TAGCCAGTGAATATGGCCAGATCTCCAATATTAATAGCCATTGCACTTTG
GAGATAGTGTAGTGAGAGCCAGCATGCAAGCAACTGAACTTCAGCACTTC
TGATCTTCTACACGCAAGGAATTCAAATATTTGAGGCTGCAGGCAAGCTC
ACAGAGGCCACGTGTTTACAGTATAGGCAGCGTTGCTTGGGGCCCTTAGG
GCTGCTGTTCTGAGAATTCTAGCCATTGTATTTTGGCTCTGCCTTAAACG
AGGGTAACAAAGACTTCCCCAAGCAAACTTTTGGGCCTGACATACAAACA
TGCATCCCTTAAGTGATGAAGTCACATTCCCAGAACTATAAAGTTTGGCA
ATTTCATTATCCGGCAGTTTTGTCACTGAGTGAACGTCAAAGCATGTACT
TCTTCAACCTTAGATGATGTGGCCTCCCACGTGCTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGAATTAGGGGACTTTGGCCAGTTTAAA
AATAAATGCTCATCCCCTCTTTCCTTTCTTGCTTCTGTGAGGGGAAGTTT
CCCAGCAAGCAAAGCCATACAGACAAGTTAGCAATGTGCCACATTCTGAG
ACCCAGCTATTAAAGTCTCATTTAGAGTTGTAGTCCCACAGGACCCCAGC
TCTTGAGTTTAATGCCTGAAATCATGTGTACAAATGCCAAAGTATATCCG
AATGATGTCTGAATGCTCTTTAGATCTTGCCTTTATCAGAATTTGAGATC
ATTTTTTTTTTGCCCCTCCCCCCACAAAATCGAGAACTCCCCTCCAGGAA
GTTCCTACAGACATAAAATACATGTCAGGCAGAGGAGCTCATCTTTATGG
CTGACAGTTACTTGTAGAAATAGAAAGTGAACCAAAATATAGTTTTCAAA
AATGTACAGTTAGTTATAAGGCTGGGGAAATTACTCTGTACAGCGGATAA
AGTGGTTTGTTGTGCAAGCATGAAGACCTGAGTTCAAGTCCCCACAACCC
ACATAAAAGCCAGGCATCATAGCATGTATCTGTAAATCCAGATATCCTAT
AGTTAGAGAGGACGTGAAGACCAGAGAATACCCAGGATGCTCACAGGTCA
GTGAGCCTGCTGTGCACCTGAACAAAACCAGACTCAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a11.b1 MSMg01no274_a11.b1 CHROMAT_FILE:
MSMg01no274_a11.b1 PHD_FILE: MSMg01no274_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:30 2005
         (614 letters)



>mm_chr1_43241011_43242024
          Length = 1014

 Score = 1125 bits (582), Expect = 0.0
 Identities = 606/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggaatacattgggctgaattcacggaattgatatgctaatactatgattcctgata 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttggaatacattgggctgcattcacggaattgatatgctaatactatgattcctgata 260

                                                                       
Query: 61  tgctaggaaactgtagaaattcaaacgttttatgaaaactcaagtaaagaaggagtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctaggaaactgtagaaattcaaacgttttatgaaaactcaagtaaagaaggagtgctt 320

                                                                       
Query: 121 atgaatctttggagaggacagcagagataaacgcactctaactcagggcaatgtcataaa 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 atgaatctttggagaggacagcagagataaatgcactctaactcagggcaatgtcataaa 380

                                                                       
Query: 181 atagccagtgaatatggccagatctccaatattaatagccattgcactttggagatagtg 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagccagtgaatagggccagatctccaatattaatagccattgcactttggagatagtg 440

                                                                       
Query: 241 tagtgagagccagcatgcaagcaactgaacttcagcacttctgatcttctacacgcaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tagtgagagccagcatgcaagcaactgaacttcagcacttctgatcttctacaggcaagg 500

                                                                       
Query: 301 aattcaaatatttgaggctgcaggcaagctcacagaggccacgtgtttacagtataggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 aattcaaatatttgaggctgcaggcaagctcacagaggccacgtgtttacagtgtaggca 560

                                                                       
Query: 361 gcgttgcttggggcccttagggctgctgttctgagaattctagccattgtattttggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgttgcttggggcccttagggctgctgttctgagaattctagccattgtattttggctc 620

                                                                       
Query: 421 tgccttaaacgagggtaacaaagacttccccaagcaaacttttgggcctgacatacaaac 480
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 tgccttaaacgatggtaacaaagactttcccaagcaaacttttgggcctgacatacaaac 680

                                                                       
Query: 481 atgcatcccttaagtgatgaagtcacattcccagaactataaagtttggcaatttcatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgcatcccttaagtgatgaagtcacattcccagaactataaagtttggcaatttcatta 740

                                                                       
Query: 541 tccggcagttttgtcactgagtgaacgtcaaagcatgtacttcttcaaccttagatgatg 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccggcagttttgtcaccgagtgaacgtcaaagcatgtacttcttcaaccttagatgatg 800

                         
Query: 601 tggcctcccacgtg 614
           ||||||||||||||
Sbjct: 801 tggcctcccacgtg 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no274_a11.g1 MSMg01no274_a11.g1 CHROMAT_FILE:
MSMg01no274_a11.g1 PHD_FILE: MSMg01no274_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:30 2005
         (284 letters)



>mm_chr1_43396859_43397542
          Length = 684

 Score =  460 bits (238), Expect = e-134
 Identities = 266/280 (95%), Gaps = 8/280 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaattaggggactttggccagtttaaaaataaatgctcatcccctctttcctttcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 449 tagaattaggggactttggccagtttaaaaataaatgctcatcccttctttcctttcttg 390

                                                                       
Query: 61  cttctgtgaggggaagtttcccagcaagcaaagccatacagacaagttagcaatgtgcca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 389 cttctgtgaggggaagtttcccagcaagcaaagccacacagacaagttagcaatgtgccc 330

                                                                       
Query: 121 cattctgagacccagctattaaagtctcatttagagttgtagtcccacaggaccccagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cattctgagacccagctattaaagtctcatttagagttgtagtcccacaggaccccagct 270

                                                                       
Query: 181 cttgagtttaatgcctgaaatcatgtgtacaaatgccaaagtatatccgaatgatgtctg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 269 cttgagtttaatgcctgaaatcatttgtacaaatgccaaagtatatccgaatgatgtttg 210

                                                   
Query: 241 aatgctctttagatcttgcctttatcagaatttgagatca 280
           || ||||||        |||||||||||||||||||||||
Sbjct: 209 aaggctctt--------gcctttatcagaatttgagatca 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)