BAC Information

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BAC

Clone NameMSMg01-274B16
Chromosome1 (Build37)
Map Location 33,118,674 - 33,118,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041238, Khdrbs2, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B16.T7 (MSMg01no274_b16.b1)MSMg01-274B16.TJ (MSMg01no274_b16.g1)
ACCAG412926AG412927
length732738
length of high quality
(start - end)
320 (38 - 357)294 (70 - 363)
definitionCHROMAT_FILE: MSMg01no274_b16.b1 PHD_FILE: MSMg01no274_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005CHROMAT_FILE: MSMg01no274_b16.g1 PHD_FILE: MSMg01no274_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTACAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTAGAGTCCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ATTGACGGTGTCTTTTGCCTTGCAGAAACATTGGAGTTTCATTAGGTCCC
ATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGG
AATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTC
TATTTTTTTTTTGCCCCCGCCCCCCTGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTACCACAAGGAGATAAGTATGGATCGATTCGGATTCTTCTAC
ACGATAAAAACCAGCTGTGCCAGTACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCCATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCCGTTTTTATCACAATTGCTCTGTACTAT
AGCTTTACGTCTGGCATGGTGATTCCGCCCGAAGTTTTTTTATCCTTGAG
AAGACCTTTTGCTATCCTAGGCTTCTTGCTAT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATAAGAAGTGAGAGAAAATCAAGCTGACTCC
AGCTCCTTGGTATGCTTGATTGAAAGGGTTATGGCGGGAGAAAGTGGGTC
AAGAGAGAAAAATTTTAACTTGGAAAATACTAACTGTAGAGTCCAAAGTT
CACCTTTCCCAAAAGTTACTTAATTAACTACCTAAAAGTTAGCCAATAAG
TAATTTGTTAACAGTTAGCAATTAGAGGTGTGATATAGCATATTCTTCAT
GTTTCAAATCTATTTTTATATTTCAAACATCATTATGCAATTACATCATT
TCTCCTTTTTTTTTACTTACCCCCCCCTCCACCCCTTTCTTTCTGTTAGG
ATGCCCTACTCACCCCACTCTATCCCAAAAAACAGGCTTCTACAGGAAGG
TAACTACTCAAGTGCTACACACAGAGGTTCCTCTAGGTGCGCTTTCAGCA
CTTACACAGACTTTCCCTATGGCTCATCGTTACTAGCGCATGTATTTTTG
GAACATGTGTATGCAAGATTGGAACAATGAATAACTTGGGGCGTAAGGAA
AGATTGTTTCTCAAAATTTTCTTCTCTCAACGTGATTACCTGTTACCTTT
AATATACCATTGTCTGCAAATATCCTTGTTGTACCCTTTGATGTTTGTTC
GCCTACTTCTTTTACTCCCTATCTGCATGTGTGACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b16.g1 MSMg01no274_b16.g1 CHROMAT_FILE:
MSMg01no274_b16.g1 PHD_FILE: MSMg01no274_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:36 2005
         (294 letters)



>mm_chr1_33118474_33119166
          Length = 693

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagaagtgagagaaaatcaagctgactccagctccttggtatgcttgattgaaagggt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaagtgagagaaaatcaagctgactccagctccttggtatgcttgattgaaagggt 260

                                                                       
Query: 61  tatggcgggagaaagtgggtcaagagagaaaaattttaacttggaaaatactaactgtag 120
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tatgg-gggagaaagtgggtcaagagagaagaattttaacttggaaaatactaactgtag 319

                                                                       
Query: 121 agtccaaagttcacctttcccaaaagttacttaattaactacctaaaagttagccaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtccaaagttcacctttcccaaaagttacttaattaactacctaaaagttagccaataa 379

                                                                       
Query: 181 gtaatttgttaacagttagcaattagaggtgtgatatagcatattcttcatgtttcaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaatttgttaacagttagcaattagaggtgtgatatagcatattcttcatgtttcaaat 439

                                                               
Query: 241 ctatttttatatttcaaacatcattatgcaattacatcatttctcctttttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctatttttatatttcaaacatcattatgcaattacatcatttctcctttttt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space:   194940
Effective search space used:   194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)