BAC Information

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BAC

Clone NameMSMg01-274B17
Chromosome1 (Build37)
Map Location 120,318,796 - 120,319,034
singlet/doubletsinglet
Overlap geneClasp1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B17.T7 (MSMg01no274_b17.b1)MSMg01-274B17.TJ (MSMg01no274_b17.g1)
ACCAG412928AG412929
length753748
length of high quality
(start - end)
239 (124 - 362)314 (435 - 748)
definitionCHROMAT_FILE: MSMg01no274_b17.b1 PHD_FILE: MSMg01no274_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005CHROMAT_FILE: MSMg01no274_b17.g1 PHD_FILE: MSMg01no274_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATT
CTCCAGATTCTGCCCGCAGTAGTGCTGCTTATGTGTGCCTTGCTCAGAAT
CCCATGTAGTTCATGTTGCCACATGCTGTACCTGAGTAGGGAAGCAATCA
CAAGTTCTAACCAGCACCCCCACTAGACAGGAGCCACCACTAAGGAGCTT
AGTATGCAGCAGGCAAGAAATAACTGAGACCCACTCTCTCATTCAGTGCT
CATAAAAACTTTATTATCTGACTGGGGAGACGGCTTAGGGGATAAAGCAC
TTGCCACACATGCACAAGGACCTGAGCTCAGCTTCCCAGAACCACATAAA
AGCTAGACATGGAGGTGCATTTATAATCTATGGGAAGATGAGAGGTGGAA
TCAGAAGGCTCTCACCCCGAAGTGTATACGTCCGCTAAACTGCTATATGC
AACAGTAGTGAGCAAGAAGTGACCCTGTCTTTAACCCAAGGGAAAGGAAG
GAAANGACTAAACCCCTGATGCTTGTTCCCAATCTTGGAACCCCCCCAAG
GAATAATGGCCCCTCCCCTACCCCCAAAATTGGGCTCAATTACCTTCCGA
TATTATCCCCCCTTTTCCCCTTTTCATTTTTCTCCCTTCCTTCTACCTTT
TTTCAAAGCTTTTATCCAAGGCCCCAATATGTATCAAACCTTACTCGGAT
TTTGGTAAAAAATCCCCGTGGTGGTTGCCCCTGATATACCCCGGTTTTCC
CAC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGGAGAAC
ACTGCTAAAGAGTTTTTAGCCCTTAAAGAAAAACAGGAAAACACTGCTAA
AGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAG
AAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATG
AACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAAC
CCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAA
CCATAGATGCCTTTTTCTTCAACCGCAACACCAGAGATGGAAGAGAGAAT
CTCAGGTGCAGAAGACTCCATAGAGAACATCAGCACAACAATCAAAGAAA
ATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGAC
ACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGA
TTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAA
ACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTAC
AGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAAT
AATCAGAACACCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b17.b1 MSMg01no274_b17.b1 CHROMAT_FILE:
MSMg01no274_b17.b1 PHD_FILE: MSMg01no274_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:36 2005
         (239 letters)



>mm_chr1_120318689_120319327
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgtacctgagtagggaagcaatcacaagttctaaccagcacccccactagacaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgctgtacctgagtagggaagcaatcacaagttctaaccagcacccccactagacaggag 287

                                                                       
Query: 61  ccaccactaaggagcttagtatgcagcaggcaagaaataactgagacccactctctcatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ccaccactaaggagcttagtatgcagcaggcaagaaataactgagacccactctctcatt 227

                                                                       
Query: 121 cagtgctcataaaaactttattatctgactggggagacggcttaggggataaagcacttg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 226 cagggctcataaaaactttattatctgactggggagacggcttaggggataaagcgcttg 167

                                                                      
Query: 181 ccacacatgcacaaggacctgagctcagcttcccagaaccacataaaagctagacatgg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ccacacatgcacaaggacctgagctcagcttcccagaaccacataaaagctagacatgg 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)