BAC Information

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BAC

Clone NameMSMg01-274L14
Chromosome1 (Build37)
Map Location 153,169,898 - 153,170,182
singlet/doubletsinglet
Overlap genenone
Upstream genePdc, BC003331, Tpr, EG625534, EG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286
Downstream geneIvns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274L14.T7 (MSMg01no274_l14.b1)MSMg01-274L14.TJ (MSMg01no274_l14.g1)
ACCAG413372AG413373
length732731
length of high quality
(start - end)
320 (40 - 359)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no274_l14.b1 PHD_FILE: MSMg01no274_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:19 2005CHROMAT_FILE: MSMg01no274_l14.g1 PHD_FILE: MSMg01no274_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATCAGCCAGAGAAGCTTGGGTATCATACAGACACCCTCCTCCCCTTTTGG
ACAGGGTCCCTTATGCCACCTGAGGGTTAAACTGCCCATGTATGGCACAG
GCCACCACAACACATTGACTTGGAGTTCCTGGGGTCAAGTTCCCGCCCTT
GGGCATGCTAGCAGTGCAGCTCCCCAGCCGCACAGCCACGGGGAAGCCTG
TGCTCTGTTCCTTGAGTTTGAACTGCATTCTTTCTTTTTGCAGAGCACTC
AAGCACTGCCTAGAACCCAGACTTTACCTCAGGTTAGCAAGCTGGACTAG
AAACTCTCTGTATTTTAGACCACTGCCCCCTAGACTTACTCTCTGACAGA
GTCAATCCATTTAGTACTCTAAATCTATGACCTGATTTTTTTATCCACGT
TTAATTTCCGGCTTGCTCACATCCTGACTTGTAATGCTTCATCGTGGTTT
TCACTATTTTAATAAAGATTTATTTTTTTCTTAAAAAAAAATTAAGTCAT
TCCTTCTGTCTGAGATGTCGGCTGCTCATTCTTTGGGGCTTACTCTCTTC
TTATCTCTCAGCTGCAGTATCGTAGAAATAGCACTGAGTTTGCTCAAGAA
GGTTTAAATTCCAGGTGTGACCCTGAACAAGTTGATTTGCTTCCGGAACT
TTACATATCCAACTTGTAAAATAAAAAGGATN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATTCAAGTCTAGGCAGGGATTCATAGCAA
GATTCTGCCTCAAGTATGTACACATTACACACCACACACACACAGAGGAT
TGTGTATGTGTGCATAGTTTTACTAAATGTGTTCTCCTGTATCCCCTTGA
GTCAAAAAGGAATAGTACTTGATCATTCTACTTCCAGCTAAACTAAAATG
CTTACTATGTTTTCCAACATTGTATTTTTGATATATCTGTTGGGTTTGGT
GGCTCATGCTTGTAACCTATAATTCCAGCACTTGAGAATCTGTCTCAAAA
CTGATTCAATANTTCCACGAAACTAAACCCAAAAACAAAACATAACATAA
CCAAGCAACCTCTTGATGGAAATAAAAATATTCTGTGAGAAGCTCACGGG
ACAGTGGTCATCAACTCTAGACTTCGTTCAAGAATGCCTGACCACACAGG
CTGCTGCTGTAGTTCTGGTTAAAGAATGTACAGGGCGCTACACGATCTCA
GTCAGTGTCGGGAATAACAAAGAATATTTTCCCTTGAAGCATGATGCCCT
GACTCTATGCTTGGCGCGCTCGCTGATTAGCAAGGCTCCTCCTGTTATAC
CTGTATACAGAAATCACACATCTGTTCGAGGATGCATTGTTTTACTCCAG
TGGTTCTCAACCTTCCTGATGCCCTTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_l14.g1 MSMg01no274_l14.g1 CHROMAT_FILE:
MSMg01no274_l14.g1 PHD_FILE: MSMg01no274_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:19 2005
         (289 letters)



>mm_chr1_153169698_153170386
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattcaagtctaggcagggattcatagcaagattctgcctcaagtatgtacacattaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaattcaagtctaggcagggattcatagcaagattctgcctcaagtatgtacacattaca 426

                                                                       
Query: 61  caccacacacacacagaggattgtgtatgtgtgcatagttttactaaatgtgttctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caccacacacacacagaggattgtgtatgtgtgcatagttttactaaatgtgttctcctg 366

                                                                       
Query: 121 tatccccttgagtcaaaaaggaatagtacttgatcattctacttccagctaaactaaaat 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 tatccccttgagtcaaaaaggaatagtacttgatcattctatttccagctaaactaaaat 306

                                                                       
Query: 181 gcttactatgttttccaacattgtatttttgatatatctgttgggtttggtggctcatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcttactatgttttccaacattgtatttttgatatatctgttgggtttggtggctcatgc 246

                                                        
Query: 241 ttgtaacctataattccagcacttgagaatctgtctcaaaactga 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttgtaacctataattccagcacttgagaatctgtctcaaaactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)