XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AGGATATCCTTTGTAACTTTTTTTTCTGGAAGAAGTACATTGAAAATAAA
TAATTTGAATCACATCTAGTAATACCTGAGCATGCAGTTGAAAAATCCTG
GATGTCTATGGAATACTTATATTTGGAGAAATTCTACATAACCAATCATT
AACTACAGGAGTATTTTTCATGTGGCAACATGTCAGTGACTATACCACTA
ATGGAAACAACACTCATCCCGCAAGTATAGTTAACCTTCAATCATCCTTT
ATAGTAGAGTGGGATGTCAGGTTACTTCCCTCATCCACAAGGATTTCAGG
GGCTGGTATTGTACCGGTCTTATGCAGTGAGTCCATTAGTGAAATGGCTG
TATCATGTCCAGACAACATATTTTTGTCTTCATATTTCTCATTCTTTGGC
ACTTACAATTTCCCTAATTCATCTTCTGTGATGTTTCCTGAGCCTTGGAT
AGAATCACTGTCCCATTTAGACATGAGCACCGGATCATCCCACTCTCAAC
ACTGAGGCCAATTTCAAGTTTCTACATTATCCATACTCCAATAAGTAGAC
TCTTACTCACACTTTCATAAGCAACTATAGTTAAATTCAGTGGCCACCAA
TAAAATGGAGACATGAAAGTAAAGGGGGGCTTACAGAGATTGGCTCCACC
AGGGGAGGATGAGGATGAGAGACAGGAATGGAAAATTATGGAAATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCCAACACAGTTTATAGCCTTGAGCTTTG
AGAGAAAATATAGCCCCTGTTCTTTAATCTGCTTTTGATTTTTTCCTATC
AAAAATGAAGAGAGTAATTTCTACACACATCTGTAGACATTTGAATGTAT
TTCTTCAAAGCAATCAGCTGAGTCTTGAGCATGTAGTAAGGCCCATATTT
TATTCATCTTTCTATAGCCAAGAGGACCTGTCTAAAGCCTGTGTACAGGG
CTTTCATGGCTAGATATATATAGTACTTTTCTGTGCAGATATTTTGCATT
TCTTTTGTTTTACCCCCCACCCCCACCCAACAAAGATCAAACAACATGCT
GCCTCTGTCCTATTAAATGACAACATTCAAGGGCAAAGTCCCATGTGTAT
AAAAAAGAATAAAATCATCCAGCCCTGTAAGCAGTTTCATTAAGTCACTT
ATATTTACTTCATATACATATGTATATGTTTTCTAGCTGTGGAATACTGC
CTATGTATTTAATATCATCTATAATGCTCAACTTCCTCATGGATATAAAT
AAGAGTAATAATTCTTACTTCAATGACTGTATGCACAGGGTAAGTAAAAT
TAAATGAGGGAATGGATGAGAGGCTCCTGGTTCAGCATCTGTCATTCTCT
GAGAATTTCTGCAGTAGTGTCACATCTGTCTGTAAGTACATTTGCTTN

Query= MSMg01no274_m14.b1 MSMg01no274_m14.b1 CHROMAT_FILE:
MSMg01no274_m14.b1 PHD_FILE: MSMg01no274_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:23 2005
         (651 letters)



>mm_chr1_118316026_118317077
          Length = 1052

 Score =  890 bits (460), Expect = 0.0
 Identities = 496/508 (97%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaac-ttttttttctggaagaagtacattgaaaataaataatttgaatcacatctagta 59
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 511 gtaactttttttttctggaagaagtacattgaaaataaataatttgaatcacatttagta 452

                                                                       
Query: 60  atacctgagcatgcagttgaaaaatcctggatgtctatggaatact-tatatttggagaa 118
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 451 atacctgagcatgcagttgaaaaatcctggatgtctatggaata-tgtatatttggagaa 393

                                                                       
Query: 119 attctacataaccaatcattaactacaggagtatttttcatgtggcaacatgtcagtgac 178
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 392 attctacataaccaaccattaactgcaggagtatttttcatgtggcaacatgtcagtgac 333

                                                                       
Query: 179 tataccactaatggaaacaacactcatcccgcaagtatagttaaccttcaatcatccttt 238
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 332 tataccactaatggaaacaacactcatcctgcaactatagttaaccttcaatcatccttt 273

                                                                       
Query: 239 atagtagagtgggatgtcaggttacttccctcatccacaaggatttcaggggctggtatt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 272 atagtagagtgggatgtcaggttacttccctcatccacaaggatttcaggggctgggatt 213

                                                                       
Query: 299 gtaccggtcttatgcagtgagtccattagtgaaatggctgtatcatgtccagacaacata 358
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 212 gtacaggtcttatgcagtgagtccattagtgaaatggctatatcatgtccagacaacata 153

                                                                       
Query: 359 tttttgtcttcatatttctcattctttggcacttacaatttccctaattcatcttctgtg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 tttttgtcttcatatttctcattctttggcacttacaatttccctaattcatcttctgtg 93

                                                                       
Query: 419 atgtttcctgagccttggatagaatcactgtcccatttagacatgagcaccggatcatcc 478
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  atgtttcctgaggcttggatagaatcactgtcccatttagacatgagcaccggatcatcc 33

                                       
Query: 479 cactctcaacactgaggccaatttcaag 506
           ||||||||||||||||||||||||||||
Sbjct: 32  cactctcaacactgaggccaatttcaag 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space:   667922
Effective search space used:   667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)