BAC Information

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BAC

Clone NameMSMg01-275B06
Chromosome1 (Build37)
Map Location 18,972,983 - 18,973,292
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275B06.T7 (MSMg01no275_b06.b1)MSMg01-275B06.TJ (MSMg01no275_b06.g1)
ACCAG413628AG413629
length764754
length of high quality
(start - end)
315 (44 - 358)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no275_b06.b1 PHD_FILE: MSMg01no275_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:45 2005CHROMAT_FILE: MSMg01no275_b06.g1 PHD_FILE: MSMg01no275_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTCTGCTTATAGAGATATCTTCTAACTTGCAGCACTGAGGACTTGC
TGCTCCTGTCCATCAAAACTTTTCATATCTCACATTTCTGTTTTCTTCTC
TTTTATTCCCATTCAGTTGGCAGCTTCCTATTCCTTACAAAGTGACTGCC
AGTGAACACGTACATGATGATTCACATGGTAACAGTGATTACATTGGAAT
AACAAAAAGATACATTTAAAAATCGTTTTTATGTTCTGTCGTATGAACAA
CAGCAATAAAAAAATAGTCACTTATTGTAGCAGATCCCTAGGAGTGTCAC
AGAGTGTCTTTATTCCCCCCCCCACCGCTTTAATTCACATGGGGTTGTTA
GTGGCCATAAAGAGTTGTAATAGAAAAAAGTAAGAGTGTTGTTGTATATC
TTTGCTATATCATATTTCTTTAATTTTTGGTTTTTTAGTGAGCTGATATT
AAATCTACTAAAACTGATAAAATACGATACCTTTGGGCTTGACTAAAGGT
TTGCAGAGAAATCATTTCTGTATCCAGCAACTAAAACAGAAGGTGCTTCT
TGTTTCACAAAATTACAACTTATTAATTCAATACACAGTAATGAAATTTC
TCTGGTTTTCTTTTTTTATTCTAAAATCACATGATTTTTCAAATTCTGAA
AACTGGCAATGCAGGTGAAATATCCTTTTCTTATCTCTGTCTTCCTCAAC
CTCATGAGTTGTTT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGATGTTTTGAGTTAGGATCCTTTT
GCATTTTGTATTTTCTTTGACTGTTGTGTCGATGTTCTCTATGGAATCTT
CTGCACCTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGTTGATGCTC
GCATCTATGGTTCCTGGTTTCTTTCCTTGGGTTTCTATCTCCAGAGTTGT
CTGCCTTTGTAATTTCTTAATTGTTTCTACTTTCATTTTTCGATCCTGGA
TGGTTTTGTTCAATTCTTTCCCCTGTTTGGTAGTGTTTTTCTGTAACCCT
TTAAGGTTTTTTTGTGCCTCCTTCTTACGGGCTTCTAGCTGTTTACCTGT
GTTTTCCTGTATTTCTTTAAGAGAGTTATTTATCTCCTTCTTAAAGCCCT
CCATCATCATCAAGAGAAGTGACTTTAGATCCATATCTTGTTTTTCTGAT
GTGATGTTATACACAGGACTTACTATGGTGGGAGATTTTGGTTTTGATGT
TGTCAAGCAAACTTGGTTTCTGTTGCTCCTGCTCTTGTTTTCCTGCTGCC
ATCTGATTATCTCAAGTGCTTGCTACCCTCAATATATCTGATTGGAGCCT
GTCCTTCCTATAATCCAGGTTGATTCAGGACTCCTCTGTAAGGAGTCCTA
CTTTCTCTTTGATCCTGTGATTGTGGGCTCCTGTCACCCTGAGATTCTGG
GTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_b06.b1 MSMg01no275_b06.b1 CHROMAT_FILE:
MSMg01no275_b06.b1 PHD_FILE: MSMg01no275_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:45 2005
         (315 letters)



>mm_chr1_18972779_18973492
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctgcttatagagatatcttctaacttgcagcactgaggacttgctgctcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcactctgcttatagagatatcttctaacttgcagcactgaggacttgctgctcct 455

                                                                       
Query: 65  gtccatcaaaacttttcatatctcacatttctgttttcttctcttttattcccattcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtccatcaaaacttttcatatctcacatttctgttttcttctcttttattcccattcagt 395

                                                                       
Query: 125 tggcagcttcctattccttacaaagtgactgccagtgaacacgtacatgatgattcacat 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 394 tggcagcttcctattccttacaaagtgactgccagtgaacatgtacatgatgattcacat 335

                                                                       
Query: 185 ggtaacagtgattacattggaataacaaaaagatacatttaaaaatcgtttttatgttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggtaacagtgattacattggaataacaaaaagatacatttaaaaatcgtttttatgttct 275

                                                                       
Query: 245 gtcgtatgaacaacagcaataaaaaaatagtcacttattgtagcagatccctaggagtgt 304
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 274 gtcgtatgaacagcagcaataaaaaa-tagtcacttattgtagcagatccctaggagtgt 216

                      
Query: 305 cacagagtgtc 315
           |||||||||||
Sbjct: 215 cacagagtgtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space:   215730
Effective search space used:   215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)