Query= MSMg01no275_b09.b1 MSMg01no275_b09.b1 CHROMAT_FILE:
MSMg01no275_b09.b1 PHD_FILE: MSMg01no275_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:45 2005
(679 letters)
>mm_chr1_43041878_43042956
Length = 1079
Score = 820 bits (424), Expect = 0.0
Identities = 474/496 (95%), Gaps = 12/496 (2%)
Strand = Plus / Minus
Query: 113 gaattctataacactgtctatacccgctcacagtcagaattctataacactgtctatacc 172
||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct: 495 gaattctataacattgtctatacctgctcagagtcagaattctagaacactgtctatacc 436
Query: 173 tgctcacagtcagaattctataacactgtctatacccgctcagagtcaaacattactatt 232
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cactcagagtcagaattctataacactgtctatacccgctcagagtcaaacattactatt 376
Query: 233 ctcatcatcttcttttattgaggcagtcacaaagatccaaacaactgttattgtatgggt 292
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 375 cccatcatcttcttttattgaggcagccacaaagatccaaacaactgttattgtatgggt 316
Query: 293 gcatgctatgacttgaatc--tgctccaaattcatgtgtcagagctttatccccaaattc 350
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcatgctatgacttgaatctgtgctccaaattcatgtgtcagagctttatccccaaattc 256
Query: 351 atgctaatagtatttcagagtggagcttttggggctaattgagattaaataaagacatga 410
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atgctaagagtatttcagagtggagcttttggggctaattgagattaaataaagacatga 196
Query: 411 gaataggctcc--------catgagtggtttaataaaaagtagaagaaagaccccagttc 462
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaataggctcccatgatggcatgagtggtttaataaaaagtagaagaaagaccccagttc 136
Query: 463 tatgcttgctctgactttccacatgac-tccctgcacaacggtgggatatagcctgaggt 521
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 135 tatgcttgctctgactttccacatgacat-cctgcacaacggtgggatatagcctgaggt 77
Query: 522 cctgactagatggcagacagatcttataactatgccctttgagtccccagcaccctgaat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 cctgactagatggcagacagatcttataactatgccctttgagtccccagcaccctgaat 17
Query: 582 ggtaattcaaataaac 597
||||||||||||||||
Sbjct: 16 ggtaattcaaataaac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_b09.g1 MSMg01no275_b09.g1 CHROMAT_FILE:
MSMg01no275_b09.g1 PHD_FILE: MSMg01no275_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:45 2005
(283 letters)
>mm_chr1_42943537_42944220
Length = 684
Score = 484 bits (250), Expect = e-141
Identities = 274/282 (97%), Gaps = 3/282 (1%)
Strand = Plus / Plus
Query: 4 aaaaaaaaataggaaaataagtgtgttctggcggagatttatgctgtttggaaacggtaa 63
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 204 aaaaaaaaataggaaaataagtgtgttctggcggagatggatgttgtttggaaacggtaa 263
Query: 64 aggaagcctgtttgtacaggagcttgtggcctccaaagatccacagcacacggcagctgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaagcctgtttgtacaggagcttgtggcctccaaagatccacagcacacggcagctgt 323
Query: 124 cagtgtgtctgctgtaagaacaggtcacgagaagccatacatgtttagccaggttaaaca 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 cagtgtgtctgctgtaagaacaggtcatgagaagccatacatgtttagccaggttaaaca 383
Query: 184 tttctgaagagtgggctcagtggtgaatactgccaggaagtaccaggtcccactgttata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttctgaagagtgggctcagtggtgaatactgccaggaagtaccaggtcccactgttata 443
Query: 244 ctgattatag-attatgggggggggg-tgcttatactatgta 283
||||| |||| || |||||||||||| |||||||||||||||
Sbjct: 444 ctgatcatagcat-atgggggggggggtgcttatactatgta 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
