BAC Information

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BAC

Clone NameMSMg01-275H02
Chromosome1 (Build37)
Map Location 56,493,620 - 56,650,965
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H02.T7 (MSMg01no275_h02.b1)MSMg01-275H02.TJ (MSMg01no275_h02.g1)
ACCAG413894AG413895
length754757
length of high quality
(start - end)
237 (124 - 360)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no275_h02.b1 PHD_FILE: MSMg01no275_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:11 2005CHROMAT_FILE: MSMg01no275_h02.g1 PHD_FILE: MSMg01no275_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,493,620 - 56,493,853)(56,650,681 - 56,650,965)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGTTATTCCAGATCAGCATCTGGATGAAAAGGCAGTGTCCCGTGAAA
CAATGTTTCAGGCTAGCCCCCTGAGAGATGCTGGCTTTCCTATGCTCTGT
GAACCAAAGTCAACCATCATACCTTTGCCTCTTTTCAGCAGCTCCATGAA
TACAGTGACGAAGTCGACCTCAAGGCCATGAGAAGCTCCCATTGTATCCT
CATGGCGGTGTTACAAGTCACCAAAAGCAAGGTAACTTCTCCTTCATGGT
TGGATATACAATGAAGACAGATGAGAAGCCACTTCAGAGGAATGTAGAAT
TCTGTGATTTATTATTTGCACCCTCTCCCAACAGTTATATAAAGAACACT
CATGTTCACATTATAGATAGGTTTGATACATATGAACCAGAAAAAAGCAA
AGCTCACTCATGGTTAAGGCTTTCCACTCACTCTGTGTGCTGTGTGGCGT
ACTTAAACAGCCGGCCTATTTATATTCAATCACATATGGGTGCTATATAT
GAATTAGGTATCTATAATGCAGATATTTTAAATATTTGTTTACCACCAAC
TGTTTAACTGAGATTTCCATGAATAGAATAAAAGATGTATGTGCTAAATA
CACCATGTAGTCGTACATGAGAATCTGGTACAATTTACTATTATTTCTTT
TTATGGTCCAGATAGGAAAAATAAAAACCACTAACTTTCTTAAATACTAT
TTTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAACAAAATGAGGCAAATGTTTGCTA
AAAGTCTAGAGATCTTCATCCCACAGGAAGAGAATCTCACCTTAGCTTGA
GAAGATGGCCAGAGAAAAGAGCAGGAGGACTCTTGTATTAGTGAGATAGT
TCAGTGTGACCAAGCATATAATCAAGAGATGGCCCTGGGAAATTAACTAA
ACCTAGATTATATCACAAAAATGTAGAATAAAATTCTCAGTACCTTGTAT
TTTATTAGTAGGGCAAGAAGACTCTCAAAGAATTTTCAACATGGTGTTAA
CTTGAAATGTGGTAGATATCTCCCCCCCCCCCCACACTAATATACATTAT
ATGTAATGATAATAAATTTCTCATAATAATATAAATAAAATTGAAGAGAT
TCCATATCAAGCTAAGTAAGACCTAGAAGATAATAAGCTTGGCTGTTACA
GTCATTCATGAAAGCAAGGGCTATGGAACAGAGTAAGATATGAGCAGTAA
ATGGGTTCTGGAGATGTTATGGAGATAATAATAACAGAATCTGACAGTTG
CTGTGAAGGAGAATAAAGAGTTATTGTAGCCCACACCCCTAACTTTAGTA
GCAAGGTGGGTATTTCTTGCTGTTCCAGAAATATAGAACCCGGGAAGAGC
ATATGGAGTGAAGCGGTTGACTGCGTATGATAGAAACCCTCAGCATTGCC
ATGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h02.b1 MSMg01no275_h02.b1 CHROMAT_FILE:
MSMg01no275_h02.b1 PHD_FILE: MSMg01no275_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:11 2005
         (237 letters)



>mm_chr1_56493420_56494056
          Length = 637

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatgctggctttcctatgctctgtgaaccaaagtcaaccatcatacctttgcctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatgctggctttcctatgctctgtgaaccaaagtcaaccatcatacctttgcctctt 260

                                                                       
Query: 61  ttcagcagctccatgaatacagtgacgaagtcgacctcaaggccatgagaagctcccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagcagctccatgaatacagtgacgaagtcgacctcaaggccatgagaagctcccatt 320

                                                                       
Query: 121 gtatcctcatggcggtgttacaagtcaccaaaagcaaggtaacttctccttcatggttgg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtatcctcatggcggtgttacaagtcaccgaaagcaaggtaacttctccttcatggttgg 380

                                                                 
Query: 181 atatacaatgaagacagatgagaagccacttcagaggaatgtagaattctgtga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacaatgaagacagatgagaagccacttcagaggaatgtagaattctgtga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no275_h02.g1 MSMg01no275_h02.g1 CHROMAT_FILE:
MSMg01no275_h02.g1 PHD_FILE: MSMg01no275_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:11 2005
         (285 letters)



>mm_chr1_56650481_56651165
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacaaaatgaggcaaatgtttgctaaaagtctagagatcttcatcccacaggaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caaacaaaatgaggcaaatgtttgctaaaagtctagagatcttcatcccacaggaagaga 426

                                                                       
Query: 61  atctcaccttagcttgagaagatggccagagaaaagagcaggaggactcttgtattagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atctcaccttagcttgagaagatggccagagaaaagagcaggaggactcttgtattagtg 366

                                                                       
Query: 121 agatagttcagtgtgaccaagcatataatcaagagatggccctgggaaattaactaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agatagttcagtgtgaccaagcatataatcaagagatggccctgggaaattaactaaacc 306

                                                                       
Query: 181 tagattatatcacaaaaatgtagaataaaattctcagtaccttgtattttattagtaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagattatatcacaaaaatgtagaataaaattctcagtaccttgtattttattagtaggg 246

                                                        
Query: 241 caagaagactctcaaagaattttcaacatggtgttaacttgaaat 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caagaagactctcaaagaattttcaacatggtgttaacttgaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)