Query= MSMg01no275_j24.b1 MSMg01no275_j24.b1 CHROMAT_FILE:
MSMg01no275_j24.b1 PHD_FILE: MSMg01no275_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:23 2005
(313 letters)
>mm_chr1_20072690_20073402
Length = 713
Score = 524 bits (271), Expect = e-153
Identities = 299/311 (96%), Gaps = 6/311 (1%)
Strand = Plus / Minus
Query: 5 gaattcatagactaacgcaatttcagggggtctccttcgatcccctgaaactcaatttta 64
|||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 663 gaattcatagacaaaggcaatttcagggggtctccttggatcccctgaaactcaatttta 604
Query: 65 ggtcatatttgcacaaactattatatata----tatatatatatatatatatatatatat 120
||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 603 ggtcataattgcagaaactattatatatatgtgtatatatatatatatatatatatatat 544
Query: 121 acatatatatatatatatatatatatatatatatgcttaaaaataatttcccagcattgt 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ac--atatatatatatatatatatatatatatatgcttaaaaataatttcccagcattgt 486
Query: 181 tgacatgtcagcatgctagcatgtataccaagtagctagtttgttatagaggatgtttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgacatgtcagcatgctagcatgtataccaagtagctagtttgttatagaggatgtttgg 426
Query: 241 ggtccgaggggattttagagaccatatactctgtatacccaggtatgattccttggtggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggtccgaggggattttagagaccatatactctgtatacccaggtatgattccttggtggc 366
Query: 301 tatataatcca 311
| |||||||||
Sbjct: 365 tgtataatcca 355
Score = 103 bits (53), Expect = 2e-26
Identities = 65/71 (91%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 87 atatatatatatatatatatatatatatatatatacatatatatatatatatatatata- 145
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 512 atatatatatatatatatatatatatatatgtatatatatatatatatatatatatatac 571
Query: 146 ---tatatata 153
||||||||
Sbjct: 572 acatatatata 582
Score = 103 bits (53), Expect = 2e-26
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 86 tatatatatatatatatatatatatatatatatatacatatatatatatatatatatata 145
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 513 tatatatatatatatatatatatatatatgtatatatatatatatatatatatatataca 572
Query: 146 tatatatat 154
||||||||
Sbjct: 573 catatatat 581
Score = 78.1 bits (40), Expect = 7e-19
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 86 tatatatatatatatatatatatatatatatatatacatatatatata 133
||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 535 tatatatgtatatatatatatatatatatatatatacacatatatata 582
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 122 catatatatatatatatatatatatatatat 152
|||||||||||||||||||||||||||||||
Sbjct: 511 catatatatatatatatatatatatatatat 541
Score = 60.7 bits (31), Expect = 1e-13
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 125 atatatatatatatatatatatatatatatg 155
|||||||||||||||||||||||||||||||
Sbjct: 512 atatatatatatatatatatatatatatatg 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 9
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_j24.g1 MSMg01no275_j24.g1 CHROMAT_FILE:
MSMg01no275_j24.g1 PHD_FILE: MSMg01no275_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:23 2005
(285 letters)
>mm_chr1_19922455_19923139
Length = 685
Score = 520 bits (269), Expect = e-152
Identities = 281/285 (98%)
Strand = Plus / Plus
Query: 1 ctgaaattttcgggaaatgatacctaaaggctctggaagcttaatggctgaaatattcag 60
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgaaattttcaagaaatgatacctaaaggctctggaagcttaatggctgaaatattcag 260
Query: 61 ttgcaggtattttattcacactaatcagtgtcaaggctgaccatttctattcagattatg 120
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttgcaggtattttattcacactaaccagtgtcagggctgaccatttctattcagattatg 320
Query: 121 gaaacaagaataaaacaatccacatttgataatactacttttaaaaaattattatatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaacaagaataaaacaatccacatttgataatactacttttaaaaaattattatatccc 380
Query: 181 tatgtagcatgatgtagtataagaatgtcctatgaaatgaaatagctcatcttgaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtagcatgatgtagtataagaatgtcctatgaaatgaaatagctcatcttgaaagaa 440
Query: 241 gaaatttttaagactttgggggaacaaaacttaataaagctcaag 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaatttttaagactttgggggaacaaaacttaataaagctcaag 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
