BAC Information

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BAC

Clone NameMSMg01-275K19
Chromosome1 (Build37)
Map Location 65,795,362 - 65,795,730
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275K19.T7 (MSMg01no275_k19.b1)MSMg01-275K19.TJ (MSMg01no275_k19.g1)
ACCAG414057AG414058
length754752
length of high quality
(start - end)
151 (174 - 324)369 (326 - 694)
definitionCHROMAT_FILE: MSMg01no275_k19.b1 PHD_FILE: MSMg01no275_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:27 2005CHROMAT_FILE: MSMg01no275_k19.g1 PHD_FILE: MSMg01no275_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAACTCTTTACCTGGGGAACAGGATACCCGTAAGTATAGCTTTACAAGG
TAAGTCTGGCCTTGAACTTTCCAATGAAATTCAAGACAGTCTATCAGAAG
TAAAGTGGGAAATAGGTTTACAAGGTACCTCTGGCCTTGAACTTTCTAAC
GAAATTCAAGACAGTCTATCACAAGTAGAGTGGGAAATAGCTTTACAAGG
TATGTTTGGCCTTGAACTTTCTCTAGCGTTAGGAGCCTTTTTGTTCCTTT
TCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATTTTGGATGAAATT
CAGGGCAATCTATCATAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAG
GAAATATGGGGCACAAAATAAGTATACAGGCCTTTCCACAGGTCTTGAAC
CTGAGGAAAAGTTTAGGGCAGGTAAGAATACCTGGGGAGAGATTAGAAGG
AAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATCAGCGAAGGTCTCTAG
GAGAAGGAGCCTATACTCATCACCATATGAGCTCAAGGAGCCAGTTCTTA
GTACTTCTGAATCATATGAGAAGGCTATTAGGGCCTGGAAGGCGCTCTCC
CGAGCAGGTGAAGCCACTGGACAACTAACAAAGATCGTCCAGAGACCTCA
GGAGACATTCTCAGATGTTGTGGCCAGAATGACAGATGCAGCATAGCGTA
TTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTGTTTTTTAAACACTGTGTGTGTATGTGAG
GGTGTGTTTGCAGGTGACCCGACTTAGTGCAGATGCATGTGTGCTCACAC
ACATTTGCATATGGACATCTACACACTGAGACAGATTTGTTTTATTCTGG
GAAGCTGAGTGATGTAAACAACATGAAAGGATCTCATAGCAGGTAGAAAA
AGTATTCAGAAATGAACTTGTTGCTAATAATGTGTTTGCTTTGATTAAGT
GAAAGCCCAACTGGTTGAAATGGAGATTCTTAGACATTATCTTCAGTTTG
GAGTTAATTTCTCTCTTGTCCAAACTCAGCAGACAATGTTTGAACCTCCT
GGGGTCTTTTCCACCTCAGATGCTGAGTTGTGAATCCACGCTCTGTTTTT
GAAAGATGACAAGGCCAGATCTTAGGCCCAATACCACAGAGTCACTGACG
GTTGCAAAGCAGGATTTCTCTAAAGACAATTTTAAAATATAAACTTTAGA
ATTGAGTTATATGGATTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTG
CCCAACAACCGCAAGGGCCCACACGGGACTCCCCACGGAATCCTAAGACC
TCTGGTGAGTGGAACATAGCGCCTGCCCCAATCCAATCGCGCAGAACCTG
AGACTGCTGTACATAGGGAAGCAGGCTACCCGGGCTTGATCTGATGCACA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_k19.g1 MSMg01no275_k19.g1 CHROMAT_FILE:
MSMg01no275_k19.g1 PHD_FILE: MSMg01no275_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:27 2005
         (369 letters)



>mm_chr1_65795162_65795930
          Length = 769

 Score =  698 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttagacattatcttcagtttggagttaatttctctcttgtccaaactcagcagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttagacattatcttcagtttggagttaatttctctcttgtccaaactcagcagaca 260

                                                                       
Query: 61  atgtttgaacctcctggggtcttttccacctcagatgctgagttgtgaatccacgctctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 atgtttgaacctcctggggtcttttccacctcagatgctgagttgtgaatccacactctg 320

                                                                       
Query: 121 tttttgaaagatgacaaggccagatcttaggcccaataccacagagtcactgacggttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgaaagatgacaaggccagatcttaggcccaataccacagagtcactgacggttgc 380

                                                                       
Query: 181 aaagcaggatttctctaaagacaattttaaaatataaactttagaattgagttatatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcaggatttctctaaagacaattttaaaatataaactttagaattgagttatatgga 440

                                                                       
Query: 241 ttcgagccccgggctaccttgccagcagagtcttgcccaacaaccgcaagggcccacacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcgagccccgggctaccttgccagcagagtcttgcccaacaaccgcaagggcccacacg 500

                                                                       
Query: 301 ggactccccacggaatcctaagacctctggtgagtggaacatagcgcctgccccaatcca 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactccccacgggatcctaagacctctggtgagtggaacatagcgcctgccccaatcca 560

                    
Query: 361 atcgcgcag 369
           |||||||||
Sbjct: 561 atcgcgcag 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)