BAC Information

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BAC

Clone NameMSMg01-275M02
Chromosome1 (Build37)
Map Location 177,363,351 - 177,528,105
singlet/doubletdoublet
Overlap geneRgs7
Upstream geneOlfr220, Fmn2, Grem2
Downstream geneFh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275M02.T7 (MSMg01no275_m02.b1)MSMg01-275M02.TJ (MSMg01no275_m02.g1)
ACCAG414118AG414119
length737745
length of high quality
(start - end)
691 (44 - 734)364 (382 - 745)
definitionCHROMAT_FILE: MSMg01no275_m02.b1 PHD_FILE: MSMg01no275_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:33 2005CHROMAT_FILE: MSMg01no275_m02.g1 PHD_FILE: MSMg01no275_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,527,419 - 177,528,105)(177,363,351 - 177,363,714)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGAAAGCACCACGTTTACTCATTTCCTAGATGCTTGGCCTGGCTG
GCAGAAGTAAAATATTCATGCCCACTAGAGACTTCCATGCTTAGACTTAC
TAACAACCATGCTCCTTCATGGCTATTTTCCTTTTTTCCTCTTTGACTAT
CTGGTCTGAGGTTATAGCAGGGAGAAACCCGAGAATCCAATGTAATGTTT
TGTTCTTAAGAAAAATTTTCTAAAGACAAAATTAAAACTGCTAAGCCCAA
ACGATTCAACTTCTTGGACTGAATTTAGTGAGTTGACAAGTTTAACCTAA
CAGAACTTTCATCTGGAATGTACGTAAGGAGGAGGAAGGTACTACAGATT
GTTGGTTTTGTTTTAAGCTATCACAGAGGGGTGATCACAAGGCACTGTGT
GAATACAGGCAGGTGAAACCATTGTGAACCTCTGAGATTTTACTCCACTC
CTTGGTTTTCCCCAAAAGATGGAGGGGCTCCGAGCTGCTTGTCCCCTCCT
GCCTGCTGTGTAAGCACAAGACACCACATGTTAGTCTATGCTGCCTGGAA
GGAAAGCTGCGCACCCCGAGGATGAAGTGGAGACACATTTCCTGTGTCGC
TGCGCTGTATTCCTGCAGGGTGAGCACGGGCTAAAGTGTACTTAGTCAGG
TGAGGAAGAAGTTTAGGGAGGAAGGTTCTTGAGAGCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCGAAAAATTCCATCCAATTCCAGGCTGAACTATAAAA
CAGAGAAGCAACAGATTGCACCGACTCCCAGATTTCTAGACACTGGAGAT
GGCAAGGTGTTTGACGACAAAGAAAAGGTTACACATCATTCCCCGGGAAC
AGGAAGCTGCAAGGTCTGACTCCTTTTCCAAGCCAAAAGACTCCTTAAAA
TTACAAAATCTTATGAGTGGGAGCCTTGTCTTTTCCTTGTCGTCTGCCCA
AAGCCTATGTCTTCACTGAATATTCTGGCCACAGACGGATAACTCTGCCC
CTGTGGTTTTTTTTTTCAGCCCCCCCCACAGTTTTGGTGGAGCACAGTTA
ACACAAGGGATGCCTCCCAGGCAACACAATCTCCAAACATGAGGCACCAA
CACTAACCAAAACACACTGCACCAATCCACTCTGTCTCTGCATGCACGTG
TCCTACTCATTCATTGCTGCTGCTGTTGGCTTTCGGTTAAATGATGTTTA
ATATGCAGAATGAGACACAGCAGCAGTCCCATCCACCCGTAAAGGATGCT
GGCAACTGAGCAGCCATCGCATCTTGGGTACATAAGAGGCTCTACCTGCC
CCCTTCTCTACCTAACTCTGTTTCCAGTCATTTAAACACACTGCCTTTGA
TTCATCATTTATTCTAACACAGAGTTAGTCTTCTAATCACCAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_m02.b1 MSMg01no275_m02.b1 CHROMAT_FILE:
MSMg01no275_m02.b1 PHD_FILE: MSMg01no275_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:33 2005
         (691 letters)



>mm_chr1_177527215_177528305
          Length = 1091

 Score = 1274 bits (659), Expect = 0.0
 Identities = 680/687 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagaaagcaccacgtttactcatttcctagatgcttggcctggctggcagaag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattcacagaaagcagcacgtttactcatttcctagatgcttggcctggctggcagaag 832

                                                                       
Query: 65  taaaatattcatgcccactagagacttccatgcttagacttactaacaaccatgctcctt 124
           |||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 831 taaaatattcatgaacacgagagactttcatgcttagacttactaacaaccatgctcctt 772

                                                                       
Query: 125 catggctattttccttttttcctctttgactatctggtctgaggttatagcagggagaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 catggctattttccttttttcctctttgactatctggtctgaggttatagcagggagaaa 712

                                                                       
Query: 185 cccgagaatccaatgtaatgttttgttcttaagaaaaattttctaaagacaaaattaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cccgagaatccaatgtaatgttttgttcttaagaaaaattttctaaagacaaaattaaaa 652

                                                                       
Query: 245 ctgctaagcccaaacgattcaacttcttggactgaatttagtgagttgacaagtttaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctgctaagcccaaacgattcaacttcttggactgaatttagtgagttgacaagtttaacc 592

                                                                       
Query: 305 taacagaactttcatctggaatgtacgtaaggaggaggaaggtactacagattgttggtt 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 591 taacagaactttcatctggaatgtaggtaaggaggaggaaggtactacagattgttggtt 532

                                                                       
Query: 365 ttgttttaagctatcacagaggggtgatcacaaggcactgtgtgaatacaggcaggtgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgttttaagctatcacagaggggtgatcacaaggcactgtgtgaatacaggcaggtgaa 472

                                                                       
Query: 425 accattgtgaacctctgagattttactccactccttggttttccccaaaagatggagggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 accattgtgaacctctgagattttactccactccttggttttccccaaaagatggagggg 412

                                                                       
Query: 485 ctccgagctgcttgtcccctcctgcctgctgtgtaagcacaagacaccacatgttagtct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ctccgagctgcttgtcccctcctgcctgctgtgtaagcacaagacaccacatgttagtct 352

                                                                       
Query: 545 atgctgcctggaaggaaagctgcgcaccccgaggatgaagtggagacacatttcctgtgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atgctgcctggaaggaaagctgcgcaccccgaggatgaagtggagacacatttcctgtgt 292

                                                                       
Query: 605 cgctgcgctgtattcctgcagggtgagcacgggctaaagtgtacttagtcaggtgaggaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cgctgcgctgtattcctgcagggtgagcacgggctaaagtgtacttagtcaggtgaggaa 232

                                      
Query: 665 gaagtttagggaggaaggttcttgaga 691
           |||||||||| ||||||||||||||||
Sbjct: 231 gaagtttaggaaggaaggttcttgaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_m02.g1 MSMg01no275_m02.g1 CHROMAT_FILE:
MSMg01no275_m02.g1 PHD_FILE: MSMg01no275_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:33 2005
         (364 letters)



>mm_chr1_177363151_177363914
          Length = 764

 Score =  696 bits (360), Expect = 0.0
 Identities = 363/364 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggtggagcacagttaacacaagggatgcctcccaggcaacacaatctccaaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ttttggtggagcacagttaacacaagggatgcctcccaggcaacacactctccaaacatg 260

                                                                       
Query: 61  aggcaccaacactaaccaaaacacactgcaccaatccactctgtctctgcatgcacgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaccaacactaaccaaaacacactgcaccaatccactctgtctctgcatgcacgtgt 320

                                                                       
Query: 121 cctactcattcattgctgctgctgttggctttcggttaaatgatgtttaatatgcagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctactcattcattgctgctgctgttggctttcggttaaatgatgtttaatatgcagaat 380

                                                                       
Query: 181 gagacacagcagcagtcccatccacccgtaaaggatgctggcaactgagcagccatcgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacacagcagcagtcccatccacccgtaaaggatgctggcaactgagcagccatcgca 440

                                                                       
Query: 241 tcttgggtacataagaggctctacctgcccccttctctacctaactctgtttccagtcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttgggtacataagaggctctacctgcccccttctctacctaactctgtttccagtcat 500

                                                                       
Query: 301 ttaaacacactgcctttgattcatcatttattctaacacagagttagtcttctaatcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaacacactgcctttgattcatcatttattctaacacagagttagtcttctaatcacc 560

               
Query: 361 agtc 364
           ||||
Sbjct: 561 agtc 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)