BAC Information

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BAC

Clone NameMSMg01-275M24
Chromosome1 (Build37)
Map Location 178,704,642 - 178,704,924
singlet/doubletsinglet
Overlap geneCep170
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275M24.T7 (MSMg01no275_m24.b1)MSMg01-275M24.TJ (MSMg01no275_m24.g1)
ACCAG414162AG414163
length1,055753
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no275_m24.b1 PHD_FILE: MSMg01no275_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:37 2005CHROMAT_FILE: MSMg01no275_m24.g1 PHD_FILE: MSMg01no275_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNGGGGGGGNNGGNNGNNNGGGNGNNNNNTTTCTTTACAAAAAAGGG
GGGGGNNNNNNNNNNNNNNNNNNTTTCTTACNNAAAGNNAGAAGNNGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TNNNNAACNAAANNAGGGGAAGANGGGGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTAAAAAGGTTGGGGGTAATAAAAAAGGGGGGGGNGGG
GNNNNGNNGNNGGGGGGTTTTTTTTGGTGGTATTCTNNNNNCGGGAGGGG
GGGGGGGGGGGGGGGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAAAAAAAAAAAAAAAAAAAAAAAAAANNNGGGGGGGGGNNNGGGG
NNNNNGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTNTNNNNNNNNNNTNTNNNTNTTTTTTTTTTTTTTTTTTT
TTTTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCATCACAAATAGCAGAGAGCA
CTATTCATGAGATTCCAACAAAAGACACACCAAGTTCCCATACAGCAGGT
GCAGGGCATGCTTCATTTACCATTGAATTTGATGACAGTACGCCAGGAAA
AGTAACTATTAGAGACCATGTGACAAAATTCACTTCTGACCAGCGCCACA
AGTCAAAGAAGGCCTCTCCAGGAACTCAAGACTTGCCAGGAATTCAGACA
GGAATGATGGCACCAGAAAATAAAGTAGCTGACTGGCTAGCCCAAAACAA
CCCTCCTCAGATGTTGTGGGAAAGACCACACCGAGGATTCCAAGAGCATT
AAAAGTGATGTTCCTGTGTACTTGAAAAGGATGAAAGGTAAAATGATCTT
CAGAGATTCCTATTGTATCATAAGTTACCAGACAGACTACTGTTACTTAA
TTATACACTGGAAAATATCTTTTTCAAAATTTACGTTTAATTTTAAAGCT
CAAGAGCAAACAGCACTGTTTATGTCCAGATTTCTCATTCATATTAGCTT
TTCTTTGTTTTCTTGCCAAAACCACATTGGTTTGGGGATGGCAGGTTACT
TATGTCATTTAATCTCTTTACCTGCAGAAATACAAAATCTATTAATTATA
CAAAGCAGAATTTTCCTGNAAATAATCCCCATCATTTTCTTGATTTAAAG
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_m24.g1 MSMg01no275_m24.g1 CHROMAT_FILE:
MSMg01no275_m24.g1 PHD_FILE: MSMg01no275_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:37 2005
         (287 letters)



>mm_chr1_178704442_178705128
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatcacaaatagcagagagcactattcatgagattccaacaaaagacacaccaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agccatcacaaatagcagagagcactattcatgagattccaacaaaagacacaccaagtt 424

                                                                       
Query: 61  cccatacagcaggtgcagggcatgcttcatttaccattgaatttgatgacagtacgccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cccatacagcaggtgcagggcatgcttcatttaccattgaatttgatgacagtacgccag 364

                                                                       
Query: 121 gaaaagtaactattagagaccatgtgacaaaattcacttctgaccagcgccacaagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gaaaagtaactattagagaccatgtgacaaaattcacttctgaccagcgccacaagtcaa 304

                                                                       
Query: 181 agaaggcctctccaggaactcaagacttgccaggaattcagacaggaatgatggcaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agaaggcctctccaggaactcaagacttgccaggaattcagacaggaatgatggcaccag 244

                                                      
Query: 241 aaaataaagtagctgactggctagcccaaaacaaccctcctca 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaaataaagtagctgactggctagcccaaaacaaccctcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)