BAC Information

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BAC

Clone NameMSMg01-275N20
Chromosome1 (Build37)
Map Location 176,710,245 - 176,845,645
singlet/doubletdoublet
Overlap geneFmn2, Grem2
Upstream geneEG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275N20.T7 (MSMg01no275_n20.b1)MSMg01-275N20.TJ (MSMg01no275_n20.g1)
ACCAG414201AG414202
length724725
length of high quality
(start - end)
314 (52 - 365)278 (83 - 360)
definitionCHROMAT_FILE: MSMg01no275_n20.b1 PHD_FILE: MSMg01no275_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005CHROMAT_FILE: MSMg01no275_n20.g1 PHD_FILE: MSMg01no275_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,845,335 - 176,845,645)(176,710,245 - 176,710,522)
sequence
NNAATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCTCAACAACAATATGAACGTCGTTGAGTTCGATTTGT
CCCTAATCTTTGGAGGAGGCAAACTAGAAATGTTGCTTGGTTCAGAAAGT
AAAATCATATTAGTACTTTGTTGATCTAGAAGAAGATTATCTATGCATTG
TGAAAGATATTTAAACCTGGAAAGTCAGGCAACTTGGTTTTCATGTTCAC
ATCTTTCCCTGGGAAAACTACCACTTCCCCCATGTTCGTTCTTTGTACTA
AATAAACAAGAGTGTATCATTGTGCTTCATACTAGTCTTAGACTTCAGCT
CTGTTCTTCTTTCTGTAAAAACCGCTGCCACAAATGTGACTCTGCTAACC
ATTTCATAGCTATCATGTGGTTTGTACAAACACAGGAGCTATTATCAGCA
TCAGAAGCATCCCCATTTTGCAGATGAGTTAATCAACACTTTGAGCTTTC
AGATTATCACATAGATGAAGATAAATAGATAGATGATATATAGATATATA
GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATCGA
TAGATCGATAGATCGAAAGATAGATAGGCCAAAGTGTGTTTGTATTTCCA
GAACTGAGGAGATAGAGAAAGGTAGATCTACGCTCTTGCTGATCGTTCAG
TCTCACCTGCTTGGTGAGTATGAG
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCATTCTTTCCAGAA
GGTAGTATCTGGTCTGCCATTTTGTTGTTATGGAACCCAATTCCTGCAAA
TTTCTCATGAACTAATATCCCTTGAAGTTTTCTGTACTTGAAACAGTTTT
CATGTGCTCTTTTACTTGTGTGGGTATTAAATGCTTGGCCTTCTTCCTCT
GTTTGCTGCCTTAAATAATGTGTTTCATTGACCACATCCTTTTAAGTCAT
ATTTTTATATTTATTTGTTACCATTTTGTGTATGTGTGCACTCATACATG
CGTGCAGGATGTTTTTTTGTCACAGCACACCCTTACGGAATTGGTTTTCT
CCTTCCTCCTTTTATGGTTTCTGAAGATTGAACTCAGGCCATAAATTTTC
TGTGTGCAAGCGCCTCTGTGCACTGAGCCATCTTTCTGAGTCTTACTGTG
TCCCATTTTTTTCATATTTGTTCTCTTTATTACTTTGGTTGTCTTCTCTT
TGGTTGAGCTTTCACCTTTTTAAGTTTTGTTTTAATCAACACACAACTTC
CTATTTATCAGGTACAACCAGATGTTTCTCTATATTTGTGGAGACCACAT
AATGAGTATATTAGAAAATGACTGGTATAAATCACTTAATTTATGACACT
TAATTCTTTGTGGTGGGAAGGTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_n20.b1 MSMg01no275_n20.b1 CHROMAT_FILE:
MSMg01no275_n20.b1 PHD_FILE: MSMg01no275_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:41 2005
         (314 letters)



>mm_chr1_176845131_176845845
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctcaac-aacaatatgaacgtcgttgagttcgatttgtccctaatctttgga 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcctctcaacaaacaatatgaacgtcgttgagttcgatttgtccctaatctttgga 456

                                                                       
Query: 64  ggaggcaaactagaaatgttgcttggttcagaaagtaaaatcatattagtactttgttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggaggcaaactagaaatgttgcttggttcagaaagtaaaatcatattagtactttgttga 396

                                                                       
Query: 124 tctagaagaagattatctatgcattgtgaaagatatttaaacctggaaagtcaggcaact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tctagaagaagattatctatgcattgtgaaagatatttaaacctggaaagtcaggcaact 336

                                                                       
Query: 184 tggttttcatgttcacatctttccctgggaaaactaccacttcccccatgttcgttcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tggttttcatgttcacatctttccctgggaaaactaccacttcccccatgttcgttcttt 276

                                                                       
Query: 244 gtactaaataaacaagagtgtatcattgtgcttcatactagtcttagacttcagctctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtactaaataaacaagagtgtatcattgtgcttcatactagtcttagacttcagctctgt 216

                      
Query: 304 tcttctttctg 314
           |||||||||||
Sbjct: 215 tcttctttctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_n20.g1 MSMg01no275_n20.g1 CHROMAT_FILE:
MSMg01no275_n20.g1 PHD_FILE: MSMg01no275_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:41 2005
         (278 letters)



>mm_chr1_176710045_176710722
          Length = 678

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaccattctttccagaaggtagtatctggtctgccattttgttgttatggaacccaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaccattctttccagaaggtagtatctggtctgccattttgttgttatggaacccaatt 260

                                                                       
Query: 61  cctgcaaatttctcatgaactaatatcccttgaagttttctgtacttgaaacagttttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgcaaatttctcatgaactaatatcccttgaagttttctgtacttgaaacagttttca 320

                                                                       
Query: 121 tgtgctcttttacttgtgtgggtattaaatgcttggccttcttcctctgtttgctgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctcttttacttgtgtgggtattaaatgcttggccttcttcctctgtttgctgcctt 380

                                                                       
Query: 181 aaataatgtgtttcattgaccacatccttttaagtcatatttttatatttatttgttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataatgtgtttcattgaccacatccttttaagtcatatttttatatttatttgttacc 440

                                                 
Query: 241 attttgtgtatgtgtgcactcatacatgcgtgcaggat 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attttgtgtatgtgtgcactcatacatgcgtgcaggat 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)