BAC Information

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BAC

Clone NameMSMg01-276A21
Chromosome1 (Build37)
Map Location 151,953,643 - 151,953,998
singlet/doubletsinglet
Overlap genePtgs2
Upstream geneLOC100042813, Pla2g4a
Downstream geneLOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276A21.T7 (MSMg01no276_a21.b1)MSMg01-276A21.TJ (MSMg01no276_a21.g1)
ACCAG414342AG414343
length740737
length of high quality
(start - end)
356 (385 - 740)302 (436 - 737)
definitionCHROMAT_FILE: MSMg01no276_a21.b1 PHD_FILE: MSMg01no276_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:54 2005CHROMAT_FILE: MSMg01no276_a21.g1 PHD_FILE: MSMg01no276_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTTAAATCCTGCATATCTTTATCTCATCAAACAAAGGGGTCCA
AGTTCAGTTTTAAATAAGCTTTTACCGCAGATACTGACAACAATCTCATT
TTTTAAAATGTTGTCTTGAGACAAATAATTTGAAATTTCTAAATTGGGAG
TTTGAATCACTTTTGAAAGCTCTTACTTTCTTAAGCTGTCAGGTTTGTAC
CGACATGGAGTAAACAGCTATCATAAACATAAATCTCCAAAACTAGTAGA
AATTATGTCATGATTGATGGTTAAGATACCATGTCAGGGATTGTCTTTTC
TTAGAAGTAGTGTTTGTTACTTACTACCACACTCAGACCTTCCTTGTATG
TCAAAATGCTGGTGTGGAAGGTGGTGGAGCCCGTGCTGCTCTGTCTTAAC
TATGAGTGTGAGCTTTAAAGCTCGTTGATGAGTGGTAGCCAGCAAAGCCT
AGAGCAACAAAAGCTTCTACAAAGGAACTAACCAAGAACAAAGAAGGGTT
CCCAATTAAAGATCACATTCAGGGTTAAACTTCCAAAGGAGACATCCTGA
TCCTGGTTTTGTGCTGGCCTGGTACTCAGTAGGTTTTTGCTGTGAGGTTA
AAGACTTGCCAGGCTGAACTTCGAAACAGTTTTTCTGTTGCACAGTATGA
TGTAACAGTCCATCTCTCAATGCAATAGGTATCAGTGGCC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAACAGTGTTGCCTATTCAGTGA
CATTCAGAATTGCTTCTTCTATTCCCAGAGAGATAGTGAAAGAAATCAGA
CATTACTATCTACTACATAGAGTTAGAAATCTCAGGGCAAGCTTAGCAAA
GTAAGTTTAGAATTATTACTATTATAGTTATGTATGGCAGACTACATTAT
TAGTAGAAAGACCCCAATCTATTACTTAGAGTAAAAGCCAAGTTGCTACC
ATATACAGGAATTTACAATGGTTTATGAAGTAGCTTGGGCTGTGGTTTTA
GAGTATTGCATTANTTANGTTCCCGCCACCCCCGCGAAATTCCCTAATTA
GAACTATGACTTGGGCATGAAAGCCCAAGAAACAAGAGTGTAAAGACCTC
ACACCTGGCTTCTAAGAATATAGCTGACCTTAGATAGATCTGACTTTGTC
TCAGTTGTTTTATTGCCCTGTTCCTGCCAGTCTTAGTGTTTGCATTCCTC
TGTTTTGTGTAAGAGTCATTAAGCATCCGGTAACCTCATTGTACCTTGCC
GATGTGTCACCTAACTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCT
CGATTTGACAAATTTTATTCAGATACAGCACACTCTCTTGTGTTATGTCT
GTTTGTCACCCTTTTCATCGACTCTTTGCCCACCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_a21.b1 MSMg01no276_a21.b1 CHROMAT_FILE:
MSMg01no276_a21.b1 PHD_FILE: MSMg01no276_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:54 2005
         (356 letters)



>mm_chr1_151953443_151954198
          Length = 756

 Score =  688 bits (356), Expect = 0.0
 Identities = 356/356 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccttccttgtatgtcaaaatgctggtgtggaaggtggtggagcccgtgctgctctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccttccttgtatgtcaaaatgctggtgtggaaggtggtggagcccgtgctgctctgt 260

                                                                       
Query: 61  cttaactatgagtgtgagctttaaagctcgttgatgagtggtagccagcaaagcctagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaactatgagtgtgagctttaaagctcgttgatgagtggtagccagcaaagcctagag 320

                                                                       
Query: 121 caacaaaagcttctacaaaggaactaaccaagaacaaagaagggttcccaattaaagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaaaagcttctacaaaggaactaaccaagaacaaagaagggttcccaattaaagatc 380

                                                                       
Query: 181 acattcagggttaaacttccaaaggagacatcctgatcctggttttgtgctggcctggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acattcagggttaaacttccaaaggagacatcctgatcctggttttgtgctggcctggta 440

                                                                       
Query: 241 ctcagtaggtttttgctgtgaggttaaagacttgccaggctgaacttcgaaacagttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtaggtttttgctgtgaggttaaagacttgccaggctgaacttcgaaacagttttt 500

                                                                   
Query: 301 ctgttgcacagtatgatgtaacagtccatctctcaatgcaataggtatcagtggcc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttgcacagtatgatgtaacagtccatctctcaatgcaataggtatcagtggcc 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)