BAC Information

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BAC

Clone NameMSMg01-276B03
Chromosome1 (Build37)
Map Location 75,390,607 - 75,390,894
singlet/doubletsinglet
Overlap geneSpeg
Upstream genePnkd, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des
Downstream geneGmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276B03.T7 (MSMg01no276_b03.b1)MSMg01-276B03.TJ (MSMg01no276_b03.g1)
ACCAG414354AG414355
length809764
length of high quality
(start - end)
197 (45 - 241)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no276_b03.b1 PHD_FILE: MSMg01no276_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:56 2005CHROMAT_FILE: MSMg01no276_b03.g1 PHD_FILE: MSMg01no276_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGTCACCAGGCAGGGTGACATGCATTTTCTCTCACGCCTAGACTC
TTCTTTTTTTTTTTTTTTTTTTCCGCGACAAGGTTTTTCCTATGAAACCT
GACTATCTAGGAACTTACTATGTAAATCAGACTGTCCTTGAACTCAGAGA
TCTGCCTACCTCAACTTCCTAGGGCTAGGACTAAAGGCTGGNTCACATGA
ACTAAATCCTTCAATCCTTTTTAAAAAAATTTTTTCTTTTTTATTACATA
TAATATACCTACCCTAGTTTCTTCTTTTTTTTTTGTTGTTCTGCTGGCCT
TTTTTCTTTGTCTTTACCTCTATCCTTTCTCTTGCACAATCACATTTATA
TTAATATTTTCATTTTATTTCGTATTTTTTTATCCCTCAATAAAATATCG
TTTTCATTTTTCTTTGTTTTTCGCTTTCTCTCTCTGTCTTTTATTTTTTT
TTTTTTTTATCTTTTATTTTTTCTTCTCTTTATTTTTTACAATTCTTTTA
TATACATTATTCTTATAAAACTTTTTCATATCGTTTTTTTATCATTTTCC
TACTTTCGCTCTTTTCTTCTGTTGTATTTTATTTTATCTTCTCCTACTAA
TTTATTTATAATATTATCGATCCTGCTATAATTAATCTCTCCTTCTTCAC
CCCCTTCCTCCCCAGATATACGCCAAGCATATAGTATTGTAATTCTGCTG
CTTTCTTCATATTATTCAATCATTCGCGTCATATTTTGTCTACTGACCTA
CACTGGGTG
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTAGTTGCCTGGGTCCTGGTTACTGTT
GTTCCCAACCAAGAATTTGACACCTGTGGGTTTTCCAAAGCAGGCCCTGA
TGGGGTGGCTACCCCTGAAGCACACTGAGCACCCAGCACCCAGACTGGTT
TCCATGGCCCTGGGTGTAAGGGTCGGGAGGCAGTCAGTGGCTCAATAGAG
TTCTCTTCCCACAAGACAGTGCCATTTCCCTCCACGTACTCCCTGTACCC
CCACAGCTGGACAACCCCATCATCACAACTGATGGACACCTGGTCGGGGA
CCCTCTCTATTGTTTTGTCTTTGCCACCACCGGCTCTGCCTTCTCCAGCT
ACTCCCTGGGCCCTGTGGCCTCCATCCAACCACTCTAGACCAAACAGTGC
CTTGTAGGGTAAGAAAGTCAGCTTGCTCCACAACCAGTGCAGAGTCTGGA
CCTGCCAGCCAGCCTCTTGGGCCCTGGAGCCAGTCTGACTTATGGGGCCT
GCTGTGATGCTTGGTATAGCCTAATGTCATAATGAACATTTTTCTGGCTG
CCCAGAACGAAGCAGGCACAGAAATGCCGTGTAGAGCTGAGGACCCAGGG
CCTGTGATGGAGGGCACAGAGGGTCTAGATGGAAGGCTCTGGAAGAACAG
GAGTGGAAATCCCCAGGTACAAATAGTATGAAAAAGAAGGGCAGGGAAGA
GAATTATTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_b03.g1 MSMg01no276_b03.g1 CHROMAT_FILE:
MSMg01no276_b03.g1 PHD_FILE: MSMg01no276_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:56 2005
         (294 letters)



>mm_chr1_75390407_75391098
          Length = 692

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagttgcctgggtcctggttactgttgttcccaaccaagaatttgacacctgtgggtt 60
           ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 488 tctagttgcct-ggtcctggttactgttattcccaaccaagaa-ttgacacctgtgggtt 431

                                                                       
Query: 61  ttccaaagcaggccctgatggggtggctacccctgaagcacactgagcacccagcaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttccaaagcaggccctgatggggtggctacccctgaagcacactgagcacccagcaccca 371

                                                                       
Query: 121 gactggtttccatggccctgggtgtaagggtcgggaggcagtcagtggctcaatagagtt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 370 gactggtttccatggccctgggtgtaagggtcgggaggcagtcagtagctcaatagagtt 311

                                                                       
Query: 181 ctcttcccacaagacagtgccatttccctccacgtactccctgtacccccacagctggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctcttcccacaagacagtgccatttccctccacgtactccctgtacccccacagctggac 251

                                                             
Query: 241 aaccccatcatcacaactgatggacacctggtcggggaccctctctattg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaccccatcatcacaactgatggacacctggtcggggaccctctctattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 692
Length adjustment: 9
Effective length of query: 285
Effective length of database: 683
Effective search space:   194655
Effective search space used:   194655
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)