BAC Information

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BAC

Clone NameMSMg01-276E11
Chromosome1 (Build37)
Map Location 160,295,353 - 160,295,602
singlet/doubletsinglet
Overlap geneAstn1
Upstream geneRasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217, 6430517E21Rik
Downstream genePappa2, 4930562F17Rik, EG240853, LOC664972, Rfwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276E11.T7 (MSMg01no276_e11.b1)MSMg01-276E11.TJ (MSMg01no276_e11.g1)
ACCAG414508AG414509
length733740
length of high quality
(start - end)
313 (45 - 357)250 (436 - 685)
definitionCHROMAT_FILE: MSMg01no276_e11.b1 PHD_FILE: MSMg01no276_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:11 2005CHROMAT_FILE: MSMg01no276_e11.g1 PHD_FILE: MSMg01no276_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTCTCTAGAACCTACATAGAAGGCTGGGCTTAAGGGAGTACATC
AGTAATCCTAGTTTTGGGACCTAGAGACAGGTGAATCCCCAGGGTTTGCT
GGCAAACCAGCTGGTGAGCTCCAAGTCCAGCTAGAGACCCTATATCAACC
AGTAATGGGGAAAAGCAATTATGGAAGAAAACTAATGTCAATCTTTGGCC
TACTTGTCAATGGACATACATATGTATATGCACATACAGTGGACCCATAC
AAGATAATCACACACACACACACACACACACACACACACACACACACACA
CACACTGTTTTTTGTTTCCCCCCCCCCCCACATTAATCCTTATCATATTG
GATCCCCTGCCTGAGCAGAACCTAACAAAAAAATAAGAGTGAAGAAGTTG
CAGGAACAAAAGTATAAGCAGCTAGACAATGGCAAGGCCATCTTAGGATA
GTGTGGACCATGTATGCGTAAGGGAGTCAGTATCTGAGGATGTCCTCTAA
AAGGTGCCTAAAAGGTGTTGGGGGTAGTTCTGATGTTTTGATTGGGAATC
AGCATGTGAACACTGAAGAACCTGCTCCCCAATTGGTTGTTGATGGATCA
ATAAAGATGCTAGTGGCCAATAAACTGGTGAAATAGGCAGGACGCGCAGT
TTTCCCCAGACAGGCTAGCAGATGATAGTTTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGAGCAGCATCTAAGTGAGC
AGAAAGGGAGAGGAATCCAAGCTCATGGAGGACAGACTGAAGGATACTTG
TTCTTAAAGTTAACTTTTGTGGTCCTGAGTGCTGCAACTCAAGATTCATA
GTGAGGGAAGTAATACTTTGTGTGTAGATCTTGTCTCACATTTCTCTGGT
AGCAGACTTGCTTCCCGTGAGTACTTATGGGAATTTATGAAGCTCATTCC
TCTTAGCTTTCTTTAGTACCATCAGGACACAGAAGTTAACTGCAACATCC
CTGGCCCCATTTACTCNCTACCTANACGAACCCAAAGATAGTTGTAAGAG
CTGTAATTATACCTAGTTGTATGTAAAAAAGATGACAAGGGTAAGAATCC
CAAGCAACTAGATGCTCCTGTGAGAAAATCAGGCTCCATGGAGTATGTGC
TTAGAAGTGCCTTGACCAAAATCAGGTCCTGTCACTCCTGGAAAAAAATG
AGAATAAATGACCAAACAAGTGTTGGCTTTCTTTTGCTTTGAGGATCAAG
TCCTATCATTTCAATGAGTCAAACACGCTTTTCCCATTTCAAGCAAGGGT
CTTTAATAAGTGATCTTGCTGTCAACCTTTCAAGCCTTGCGTATTTCCAA
GTCATCTGCAGTTTTGGGGATCTTTTAAAGACTCCTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_e11.g1 MSMg01no276_e11.g1 CHROMAT_FILE:
MSMg01no276_e11.g1 PHD_FILE: MSMg01no276_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:11 2005
         (250 letters)



>mm_chr1_160295153_160295802
          Length = 650

 Score =  476 bits (246), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagggtaagaatcccaagcaactagatgctcctgtgagaaaatcaggctccatggagta 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggtaagaatcccaaggaactagatgctcctgtgagaaaatcaggctccatggagta 260

                                                                       
Query: 61  tgtgcttagaagtgccttgaccaaaatcaggtcctgtcactcctggaaaaaaatgagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcttagaagtgccttgaccaaaatcaggtcctgtcactcctggaaaaaaatgagaat 320

                                                                       
Query: 121 aaatgaccaaacaagtgttggctttcttttgctttgaggatcaagtcctatcatttcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatgaccaaacaagtgttggctttcttttgctttgaggatcaagtcctatcatttcaat 380

                                                                       
Query: 181 gagtcaaacacgcttttcccatttcaagcaagggtctttaataagtgatcttgctgtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtcaaacacgcttttcccatttcaagcaagggtctttaataagtgatcttgctgtcaa 440

                     
Query: 241 cctttcaagc 250
           ||||||||||
Sbjct: 441 cctttcaagc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)