BAC Information

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BAC

Clone NameMSMg01-276F09
Chromosome1 (Build37)
Map Location 177,645,707 - 177,645,940
singlet/doubletsinglet
Overlap geneWdr64
Upstream geneFmn2, Grem2, Rgs7, Fh1, Kmo, Opn3, Chml
Downstream geneExo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276F09.T7 (MSMg01no276_f09.b1)MSMg01-276F09.TJ (MSMg01no276_f09.g1)
ACCAG414549AG414550
length771765
length of high quality
(start - end)
234 (128 - 361)43 (77 - 119)
definitionCHROMAT_FILE: MSMg01no276_f09.b1 PHD_FILE: MSMg01no276_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:15 2005CHROMAT_FILE: MSMg01no276_f09.g1 PHD_FILE: MSMg01no276_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCCACTCCACGAAACATCGGAACTTTCTGACAGAGAACTGAGGA
ATCCCAAACCCAATGCTGTTTCACCTTGGCCTCACCATGATTTCACATAA
CTATCTCAGGTTACATAGGCAGCCAAACGTACATTAATGATGCTGAACAG
TGCTTATAAAATGAGAACATACAAAAGTGCCCTCCTTCCCAACAGTCCTG
GTCCCCAGTTGTACAATCAGTCACCATTCTATGCATTCTATGCAGTTATG
AAAGGAATTTGCTCATGGATTTAAGGAACTGACCACAAGAACTTAATATG
GGGAGATTATCCTAGTCTTTCCCCCCCACTCCCAGTCCTCTAAAACAAGA
TAGGAAGAAGGGGGGGAGGGTCCCAAGCAAAGAAAAAGCTTGAAGCTCTG
CTGCTGTTGCTGATAAGGAAGGACTTGGGTGTAGGACTGAATAGAAGCCC
CTGAAATCTATGCAGTGGCAACTGAGCGGTAGCATGTAGATTGGCCTTAT
GCCAACAACCCGAGTGACATTGATAACTGGTTCTTCCCACAGACTCCAGT
AAAAACACTTTCCTACTGTGTCTGTAGCCTGAGCCCCCTTGATATCCATT
TTGGACTCTGCCTTATGAAGCTATGAGTTAATAAAGGGGCTCCTTTAATG
TCAGGTTTGTGGCCACTTGATTTGTTGCCCCTTAGACACATATACTACAT
GAAGGCCCAGGGGTTTGCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTTGGGAAAGTTCTTGGGTGT
CCCTGGGTCATGTTGGTATTTATCCTTGATTTTACAGGAGCCCACTACTA
AAAGACTCTGGCGAGTTTAAAGAGGCCGAAATGTTAAATCATTTTAAGTT
GTAAAGACTATGGGACTTTTACAGTTTAATGTGAGATCTTGGGGATAAAG
AAGAAAGGACTGAGGCTTAATAGTGAGGTGCGTATGTCAAGTTGGCAAGG
GGTCAATTGTGCTGGCTAGTCTAATGTCAAGTTGACACATGTTAAAAGTA
ATTTCAAAGGAGGTTTCCTCTTTTGCACCCACCCCGCCTTCATAAGATGC
AAGATATTTTCTTAATTAGCGATGGATGAGAAAGAAACCCGCTCATTGTA
GGGGGTGCCATTTCTAGGCTGGTGGACAAGTTCCATAAGACATCAGTAAG
GCTAATCAAACCAAGGGAAGCAAGCCAGTAAGCAACACCCCTCTATGGTC
TCTGCATTAGCATCTGCCGTTTGAATTCCTGTCCTGTCTTCCTTCAGTGA
GGAACTACCATTCCTCCACCTAACAAGCCAGTGTGCAGTTTTGAGAGTTG
GGGCTCAGCTAAAAAGCTAACTAGCCTGAAGTCACACAGGAAGCATCATG
GTTACAAGGGAAGGAATCTCCTTTATCTGGTATCTGTCTACGCTGGTGGG
CTGGGAATGTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_f09.b1 MSMg01no276_f09.b1 CHROMAT_FILE:
MSMg01no276_f09.b1 PHD_FILE: MSMg01no276_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:15 2005
         (234 letters)



>mm_chr1_177645507_177646140
          Length = 634

 Score =  398 bits (206), Expect = e-115
 Identities = 227/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcaccatgatttcacataactatctcaggttacataggcagccaaacgtacattaa 60
           |||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 201 ggcctcaccatgatttcatataactatctcaggttacataggcagtcaaacatacattaa 260

                                                                       
Query: 61  tgatgctgaacagtgcttataaaatgagaacatacaaaagtgccctccttcccaacagtc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgctgaacagtgcttataaattgagaacatacaaaagtgccctccttcccaacagtc 320

                                                                       
Query: 121 ctggtccccagttgtacaatcagtcaccattctatgcattctatgcagttatgaaaggaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 321 ctggtccccagatgtacaatcagtcaccattctatgcattctatgcaattatgaaaagaa 380

                                                                 
Query: 181 tttgctcatggatttaaggaactgaccacaagaacttaatatggggagattatc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgctcatggatttaaggaactgaccacaagaacttaatatggggagattatc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)