BAC Information

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BAC

Clone NameMSMg01-276M06
Chromosome1 (Build37)
Map Location 106,729,864 - 106,730,219
singlet/doubletsinglet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276M06.T7 (MSMg01no276_m06.b1)MSMg01-276M06.TJ (MSMg01no276_m06.g1)
ACCAG414858AG414859
length759761
length of high quality
(start - end)
374 (382 - 755)356 (384 - 739)
definitionCHROMAT_FILE: MSMg01no276_m06.b1 PHD_FILE: MSMg01no276_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:46 2005CHROMAT_FILE: MSMg01no276_m06.g1 PHD_FILE: MSMg01no276_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACCAGACTTTCAAAGAAGAGCTAATTCCAATACCTCTCAAACTA
GTCAACAAAGTAGAAACAGAGGCAACACTGCTAAACTCATTCTATGAGGC
CACAATCACCATGATACCTAACTCACACAGACTCAACAAAGAAGGAGAAC
ATCAGACCAATTTCTCTCATGAAGATTGATACAAAAATACTCAATAAAAT
ACTCAAAAAAAGAATTCAGGAACACATCAAAGACATTATCCATCAAGATC
AAGTAGGCTTCATCCCAGGGATATAGGGATGATTGAATACACAAAAATCC
ATCAACATAATCTATTATATAAACCAACTGAAAGAAAAAAAAATATCTCA
TGATCATCTCATTAGATGATGAAAAAAATCTTTGATAAAATATAACACCC
CATCATGTTAAGGGTATTAGAGCAATCAGATATACAGGGTAAATATACCT
AAACTTTGATTGTGTTTTCATCAAAGTAATATACAGCAAACTAATAGTCA
ATATCAAGCTAAATGGAGAGACACTTAATGCAGCTCCACTAAAATCAGGG
ACAAGACAATGCTGCCTTCTCTCTCTCTTCATATAGTACTTGAAGTTCTA
CCCAGAGCAGTAAGACAACTAAATGAGATCAAGGACAGTACAACTTGGAA
AGGAAGAAGTCAAAGTATAGTATGGCTATTTGTGGTAGGTATGATAGTAT
ACGTAAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTAGCAGCAGGGTACCAGTG
ACCTACCTGGAAGAGACATATGACTTGGAGAAGACTATGTTCCTAGATAG
GCAGAGTATTTCTTGTACTCCAGTTGGAATATGGGATGGGGAGACATGTG
AAGAGAACTAAATCAATTAGAAATGAGCATGGATTTGAAAGAAGCCTCAA
GAATATGCTTATTCCCTAAGAATCTCAGTGACACCAAGATCAGCAGTCAT
CTTCTTCCGGTATCTTGTTCTAGAAGCCCAGGCTATCACCATCTCCTCTC
GAACCTGAGGGTCTAGTAGTTTGTACCCCGTGGGGAAATGGATAGCTAAA
TGGCTTTTGGTTCTTAGTAATACAAAGTACTGACAGACTAATGAAAAGAG
AGCAATGCCATGAGGCTTGTCTCAGGAAATACTGTCAAAAAGTAGCAAAT
GTCCTGAGCAAAAGTTCCTCTCACCCAGAAAGTTAGGGTGCACCCTCAGG
AGCGTGGAGCTCCTGCTTGTTGGGGAATAACTATGATGCCTTTGTAGAAT
GGACCTTGGGAAAGAAGTAGACTCATGGGAAAATAGAGCTTATTTGCACA
TCTGAGTCTGTGAACTGAAGTCCTTGCCTGCTTCATGTAGAGGAACCTTC
TAGATTTTTGGAAAGCTCAGCTGCAGCAATATCTGCACGATGGGGGAGAT
TATAAATCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_m06.g1 MSMg01no276_m06.g1 CHROMAT_FILE:
MSMg01no276_m06.g1 PHD_FILE: MSMg01no276_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:46 2005
         (356 letters)



>mm_chr1_106729664_106730419
          Length = 756

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaatggatagctaaatggcttttggttcttagtaatacaaagtactgacagactaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggaaatggatagctaaatggcttttggttcttagtaatacaaagtactgacagactaatg 497

                                                                       
Query: 61  aaaagagagcaatgccatgaggcttgtctcaggaaatactgtcaaaaagtagcaaatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaaagagagcaatgccatgaggcttgtctcaggaaatactgtcaaaaagtagcaaatgtc 437

                                                                       
Query: 121 ctgagcaaaagttcctctcacccagaaagttagggtgcaccctcaggagcgtggagctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 ctgagcaaaagttcctctcacccagaaagttagggtgcaccctcaagagcgtggagctcc 377

                                                                       
Query: 181 tgcttgttggggaataactatgatgcctttgtagaatggaccttgggaaagaagtagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgcttgttggggaataactatgatgcctttgtagaatggaccttgggaaagaagtagact 317

                                                                       
Query: 241 catgggaaaatagagcttatttgcacatctgagtctgtgaactgaagtccttgcctgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catgggaaaatagagcttatttgcacatctgagtctgtgaactgaagtccttgcctgctt 257

                                                                   
Query: 301 catgtagaggaaccttctagatttttggaaagctcagctgcagcaatatctgcacg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 catgtagaggaaccttctagatttttggaaagctcagctgcagcaatatctgcacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)