BAC Information

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BAC

Clone NameMSMg01-276O24
Chromosome1 (Build37)
Map Location 6,791,281 - 6,791,451
singlet/doubletsinglet
Overlap geneSt18
Upstream geneNpbwr1, 4732440D04Rik, Rb1cc1, EG620393, LOC100039302, LOC664946
Downstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276O24.T7 (MSMg01no276_o24.b1)MSMg01-276O24.TJ (MSMg01no276_o24.g1)
ACCAG414980AG414981
length758759
length of high quality
(start - end)
264 (436 - 699)373 (383 - 755)
definitionCHROMAT_FILE: MSMg01no276_o24.b1 PHD_FILE: MSMg01no276_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:58 2005CHROMAT_FILE: MSMg01no276_o24.g1 PHD_FILE: MSMg01no276_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTCTGCATCCAAAAATGCTTTTAGTTACTATGGCAATATTTAC
TTGATCCTGGCAGTCCAGTGTCCATTTAGGGAGATAATTACCAGAAAGGA
AGATGATGGAGATGTATTTTTGAGTGTCCTTGTCAGAGACAATGTTTATT
AAAAAAAAAATGAATGAGACAAAAAAAAATGCACATTGTCTCCCAGGCAA
ATGCTCTCTGCCACAGCTTCATGCTGAATGCTGTACTTTCTTCCCTTCAA
AGATGTTTATTAACAAAGAATGTGCTTCACTTGGTGTCCTTAACAGTCTG
CAAGGAGGCTTATTTTCTTATGCCGCCCATCCCCCACTTGCCTTTGAAAT
TCAGAAATGGTTGTCTTTTTGTTTGATTGTATTTGTTCTGGTTGGTGTCA
GCGGACTCTTGGTGGGCTGGTTGGTAGATCTCCCAGTCTGGTGGACACTG
AGAATCCACATGCTCAGTTGGATTAACTAAAGTTGGGGCAGCTTTAGTGA
ACTGACATACATACATACATACATACATACATACATACATACATACATAC
ATACATATATACATGCATGCATGCATACATACATATATACATGCATGCAT
GCATACATACATATATACATGCATGCATGCATGCATGCATGCATACATAC
ATACATGCATACATACAAGACAAGACTAGTAAAGGAGTGGTACTGGGCAC
TTAGAGGN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTAAACCCATCTGGTCCTGG
GATTTTTGGTTGGGAGACTATTAACCACTGCTTCTATTTCTTTAGGGATT
ATGGGACAGTTTAGACAGTTTATCTCATCCTGTTTTAACGTTGGCACCTT
GTATTTGTCTAGAAAATTGTCCATTTCATCCAGATTTTACAATTTACTTG
AGTATAAACATTCATAGTAGCATATGATAATTTTTGAATTTCCATGGTTT
CCATTGTTATGTCTTCCTTTACATTTCTGATTTTATTAATTTGGATACTA
TTTCTGTGCCCTCTCTTTAGTCTGGCTAAGGGTATATCTATCTTGTTGAT
TTTCTCAAAGAACCAGCTTTGTATAGTTCCTTTTGTTTCTACTTGGTTGA
TTTCAGTGCTGAGTTTAATTATTTCCTGCCATCTACTCCTCTTGGGTGTA
TTTGCTTCTTTTTGTTCAAGACCTTTCAGGTGTGTTGTCAAGTTGCTAAT
GTAAACTCTCTCCAGTTTGTTTTTGGAAGCACTTAGAGCTATGAGTTTTC
CTCTTACCACTGCTTTCATTGTGACTCATAAGTTTTGGTATGATGTGTTC
TCATTTTCATTAAATTCTAAAAAGTCTTTAATATCTTTCTTTCTTTATTC
CTTGACCAAGGTATAATTGAGTATAGCATTTTTCAGTTTTCATGTGTATG
TTTGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_o24.b1 MSMg01no276_o24.b1 CHROMAT_FILE:
MSMg01no276_o24.b1 PHD_FILE: MSMg01no276_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:58 2005
         (264 letters)



>mm_chr1_6791081_6791744
          Length = 664

 Score =  308 bits (159), Expect = 3e-88
 Identities = 168/171 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggttggtgtcagcggactcttggtgggctggttggtagatctcccagtctggtgga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttctggttggtgtcagcggactcttgatgggctggttggtagatctcccagtctggtgga 260

                                                                       
Query: 61  cactgagaatccacatgctcagttggattaactaaagttggggcagctttagtgaactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgagaatccacatgctcagttggattaactaaagttggggcagctttagtgaactga 320

                                                              
Query: 121 catacatacatacatacatacatacatacatacatacatacatacatacat 171
           |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 321 catacatacatacatacatacatacatacatatatacatatatacatacat 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)