Query= MSMg01no277_b24.b1 MSMg01no277_b24.b1 CHROMAT_FILE:
MSMg01no277_b24.b1 PHD_FILE: MSMg01no277_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:12 2005
(234 letters)
>mm_chr1_194854110_194854743
Length = 634
Score = 398 bits (206), Expect = e-115
Identities = 225/238 (94%), Gaps = 12/238 (5%)
Strand = Plus / Minus
Query: 1 tcaccacttgttctattgttgcaaatatcaaggtggtctctatagagtctataccatgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcaccacttgttctattgttgcaaatatcaaggtggtctctatagagtctataccatgcc 254
Query: 61 attgtatatacataccacaaagttgcagtatttgtcattattttggcagatatatccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attgtatatacataccacaaagttgcagtatttgtcattattttggcagatatatccagc 194
Query: 121 agttagttcttcttggtatataaccaggagaaaggcatgcacatgtgtattaaagagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agttagttcttcttggtatataaccaggagaaaggcatgcacatgtgtattaaagagaca 134
Query: 181 tacttaaaaaggtcta------tttttttattaatacaaacctaaactcaaggcagtc 232
|||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 133 tacttaaaaaggcctagagcaat------attaatacaaacctaaactcaaggcagtc 82
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no277_b24.g1 MSMg01no277_b24.g1 CHROMAT_FILE:
MSMg01no277_b24.g1 PHD_FILE: MSMg01no277_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:12 2005
(673 letters)
>mm_chr1_194718765_194719837
Length = 1073
Score = 1201 bits (621), Expect = 0.0
Identities = 660/673 (98%)
Strand = Plus / Plus
Query: 1 ttatgtacattacaacttgggagccactgtctgtgtttaataaatgggaccctgatggga 60
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 ttatgtacattactacttgggagccactgtctgtgtttaataaaggggagtttgatggga 260
Query: 61 gtcaaaacagtattttttttcttgtcttctaatagaactcaccatgtaactttcctactc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaaacagtatttcttttcttgtcttctaatagaactcaccatgtaactttcctactc 320
Query: 121 aaccccaatgccctgcgcatgcctctctctacacctcatatatcacaatgaaagacacta 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 321 aaccccaatgccctgcgcatgcctctctctacacctcatatattacaatgaaagacacca 380
Query: 181 cccgatgctgtctcagtacatcaaaatacaagatgagggaagactgcccatccaacctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgatgctgtctcagtacatcaaaatacaagatgagggaagactgcccatccaacctgt 440
Query: 241 agcctcttctgcagcacatggcacacggctggggtcctcatacattaggagaaaaggaaa 300
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 441 agcctcttccgcagcacatggcacacagctggggtcctcatacattaggagaaaaagaaa 500
Query: 301 cctactcagtagacaaggttcacagaagactttcacaatggtagtgttgattctaccata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctactcagtagacaaggttcacagaagactttcacaatggtagtgttgattctaccata 560
Query: 361 gagactttactcatcagccaaagggctcataaagactctaggacatagtaatcactaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagactttactcatcagccaaagggctcataaagactctaggacatagtaatcactaaca 620
Query: 421 gtgaaggggaagagggtaggtgggaatcttgtctaatattaacaaactttaacaaagaaa 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgaagggaaagagggtaggtgggaatcttgtctaatattaacaaactttaacaaagaaa 680
Query: 481 tagaaacaaacttgggtaagtgtgctcaggaaggcaacattctctcctctgacccctgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagaaacaaacttgggtaagtgtgctcaggaaggcaacattctctcctctgacccctgac 740
Query: 541 acaagtacaggttatcagacatcccgtcatttcacagcatagaaaggtgtatacaggcaa 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 acaagtacaggttatcagacatcctgtcatttcacagcatagaaaggtgtatacaggcaa 800
Query: 601 tggaaataccgtgagttaatatatcttcagaatcgaagtacagtgtagacacaacaaaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggaaataccgtgagttaatatatcttcagaatcgaagtacagtgtagacacaacaaaca 860
Query: 661 gatcccaagtcct 673
|||||||||||||
Sbjct: 861 gatcccaagtcct 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
