BAC Information

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BAC

Clone NameMSMg01-277J09
Chromosome1 (Build37)
Map Location 23,504,113 - 23,504,281
singlet/doubletsinglet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J09.T7 (MSMg01no277_j09.b1)MSMg01-277J09.TJ (MSMg01no277_j09.g1)
ACCAG415446
length775811
length of high quality
(start - end)
---169 (205 - 373)
definitionCHROMAT_FILE: MSMg01no277_j09.b1 PHD_FILE: MSMg01no277_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:45 2005CHROMAT_FILE: MSMg01no277_j09.g1 PHD_FILE: MSMg01no277_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTACTTCANNNCCNCCGGNNNNNNNNGGATCTATAAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCAAATACGCGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGN
GGGGGGCTGGGGGGTTTACACAAATGATTCTATAAACAANCCNNAAANNN
NNNCCAAGCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCCCNATAAAATTATTTATATTATGAT
GTTAATAAAGTGAAAGTAAAAAGATGATTTTAAACCAATGTGGATCGAAT
AAGATGAAATGCCCCCATGTATTAGAAGTTTCCAGAATATCCAGTCAGAG
TGAATTATTCAAAAGGAATTCATTTAATAAACTACTGGCAAATCTAAGGC
AAGAAAACGGAGCATAGATATTATGGATAGAAAGAGATGCAGGAGAATCA
GGAAGAGGAGAGAAAGATATAAGAGAAGTAATTGATTATTTTTAAAGTGG
CATTTACAATGGGAGTAGACAATTTGGATGAGATACTCCCAGCAGCCAAC
CACTATTAATTAATTCAGTAATTTAAACCTTCCTACTACAAAAAAGTAGC
AAAAACGGGGTGCGGGGGGGATTTAATATAGCTGGAATCATGTGATGGGT
GGGTCCCATCAAAAATTATTCCAGATTATAGAAAAGGGGAGCGAGGTGAT
TTTTTTTTATAAAATTCGAGAGGGGTCTTGTTAAAAAGCCTATAATGAAC
TTTGAAGAAAGGGAAACATTTAATTCGGGGAATTAAAATTAAAAGAATTT
CTTAAATATTTATTATGAAATCCCTGTGTACATATTATGTTAGGGAGGTT
ATTAGGGTTTAAAAAAAATTTTTAAAAGGGTAAAAAAAAAAAATATGTTA
GGGGGTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j09.g1 MSMg01no277_j09.g1 CHROMAT_FILE:
MSMg01no277_j09.g1 PHD_FILE: MSMg01no277_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:45 2005
         (169 letters)



>mm_chr1_23503913_23504481
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaatgcccccatgtattagaagtttccagaatatccagtcagagtgaattattcaaaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgaaatgcccacatgtattagaagtttccagaatatccagtcagagtgaattattcaaaa 310

                                                                       
Query: 61  ggaattcatttaataaactactggcaaatctaaggcaagaaaacggagcatagatattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggaattcatttaataaactactggcaaatctaaggcaagaaaacggagcatagatattat 250

                                                            
Query: 121 ggatagaaagagatgcaggagaatcaggaagaggagagaaagatataag 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggatagaaagagatgcaggagaatcaggaagaggagagaaagatataag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)