BAC Information

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BAC

Clone NameMSMg01-277J13
Chromosome1 (Build37)
Map Location 65,201,434 - 65,201,720
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik
Downstream geneIdh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277J13.T7 (MSMg01no277_j13.b1)MSMg01-277J13.TJ (MSMg01no277_j13.g1)
ACCAG415452AG415453
length724719
length of high quality
(start - end)
289 (385 - 673)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no277_j13.b1 PHD_FILE: MSMg01no277_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:46 2005CHROMAT_FILE: MSMg01no277_j13.g1 PHD_FILE: MSMg01no277_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATGGTTTCCCTATCCATATTTATGATATTTTTTTCTAGGTACA
AAAAAAAAACACTTTTTCTATATACCCACAGTCTTAGTAGGCATCCTAAG
ATGCAGAAGAACAAACCATTCCTAATTTTTACATTTCAGAATCACTTGCT
AAGCATCATAGCCCTTCATATCCCTCCAAGGGACACATTAAAGATACCTA
TAGTCCAATGGGAGCATACAGATATTAAACAAATATTTTAATTAACAGTA
AAAAAATTTTTCAGCTGCTATTTGTTTTGTTTTGCTCTGTTTTGAAGCAA
GGTGTTACCATATGATTTATATTAGCCCGCACCTCACAATCCTCCTGCCT
CAACCCCTTTGAGTGCTAGGATATAGTAGTGTACCACCAAGCCAATCTGA
GGGTTTTGGTGTTTATATACATATATACATACATACATACATACATACAT
ACATACATACATACATACATACATACTACATACATACATACATACATACA
CACACACAATGTATGTTGATCATATTCTTTCCCCTCCCTCAATTCCTGCA
AGCTCCTCCCCAACTCCTTATCCACCCAACTTCATGCCTTTGTGTCCTCT
CCTTCTTTCTCAAAAAAAAGGATCAAAAAATCAAACCATGATAATCAAGA
ACAAAATCTAAAACAAAACATGCC
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTATGCCCCTGAATCCTGCTGC
TGCCAACATTTTGCTGAGGAGTCATCTTCCAGGTCAGTAGTCCTGACCCT
CCTGTGGTTACAAAATCAACCATTAGCCTGTGGACACATTAGTCAGCAGC
TGCCATTTGATAGTTGTTTTAGACATTAACTGGCTCTTGGCCAGATGCTG
GGCTTGGGCAATGTAGTGGCACTCATTTGAGTGACTCCCAGAATCTTTGA
GAGCAGGAGGGGTGAAGAGATCACCCAGACCAAAGCCATTGTTCTGTTCC
ACACTGTTTCTTCCTCCTATTCTTCCCCACCTCACACAAACAGGTGGAGA
GAGACAAGGCTTTGCTGAGTCAGGACTCCTGAAGTCCCTTTGCCAATGGC
CATTGACATATTCTGTAGTCTCAAGCAAAGCTCCTTCCACTGCCTTCATG
TCTTTCCTTACAACATATTAGTAGTGATAGCTACCACCTACCATGAAGAG
TCTATGAAACAAAAGATAGTGGAAATGGGATCCATCCTTTTGTTTGTTTG
TTTGGAACAGATTCTCACATAGTACCTAGCCTTGACCTTGCTCTGTATTG
GAGGATAACCTTNAACTTCTGATGCTCTGCCTTCAGCTCCAGGCCTATAC
CACTATGTCTGACTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_j13.g1 MSMg01no277_j13.g1 CHROMAT_FILE:
MSMg01no277_j13.g1 PHD_FILE: MSMg01no277_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:46 2005
         (289 letters)



>mm_chr1_65201234_65201920
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 283/289 (97%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctatgcccctgaatcctgctgctgccaacattttgctgaggagtcatcttccaggtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcctatgcccctgaatcctgctgctgccaacattttgctgaggagtcattttccaggtca 260

                                                                       
Query: 61  gtagtcctgaccctcctgtggttacaaaatcaaccattagcctgtggacacattagtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagtcctgaccctcctgtggttacaaaatcaaccattagcctgtggacacattagtcag 320

                                                                       
Query: 121 cagctgccatttgatagttgttttagacattaactggctcttggccagatgctgggcttg 180
           |||||   || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcta--atctgatagttgttttagacattaactggctcttggccagatgctgggcttg 378

                                                                       
Query: 181 ggcaatgtagtggcactcatttgagtgactcccagaatctttgagagcaggaggggtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggcaatgtagtggcactcatttgagtgactcccagaatctttgagagcaggaggggtgaa 438

                                                            
Query: 241 gagatcacccagaccaaagccattgttctgttccacactgtttcttcct 289
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 gagatcacccagtccaaagccattgttctgttccacactgtttcttcct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 687
Length adjustment: 9
Effective length of query: 280
Effective length of database: 678
Effective search space:   189840
Effective search space used:   189840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)