Query= MSMg01no277_o07.b1 MSMg01no277_o07.b1 CHROMAT_FILE:
MSMg01no277_o07.b1 PHD_FILE: MSMg01no277_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:06 2005
(315 letters)
>mm_chr1_24746090_24746804
Length = 715
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 5 gaattcagagcctcctgaagcacaacacaactctctggctctcagccgcacctcaagaaa 64
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 450 gaattcagagcctcctgaagcacaacacaactctccggctctcagccgcacctcaagaaa 391
Query: 65 agaattctaagtcacgagaaattcctctctctatgggcatctggtaatgtcccgagaagc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agaattctaagtcaggagaaattcctctctctatgggcatctggtaatgtcccgagaagc 331
Query: 125 tgggctatggaaagggggtggtggggtacagtggcacaggcatctggtataggagaatca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgggctatggaaagggggtggtggggtacagtggcacaggcatctggtataggagaatca 271
Query: 185 gaacaataatgattattccgggcaaaacagtcatttacagacaggtctcacagtttgaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaacaataatgattattccgggcaaaacagtcatttacagacaggtctcacagtttgaat 211
Query: 245 ctaaaggatagatagatagatagatagatagatagatagatagataga 292
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctaaaggatagatagatagatagatagatagatagatagatagataga 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 133
Number of extensions: 41
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_o07.g1 MSMg01no277_o07.g1 CHROMAT_FILE:
MSMg01no277_o07.g1 PHD_FILE: MSMg01no277_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:06 2005
(349 letters)
>mm_chr1_24544395_24545143
Length = 749
Score = 532 bits (275), Expect = e-155
Identities = 327/349 (93%), Gaps = 9/349 (2%)
Strand = Plus / Plus
Query: 1 atcttaaagatgcttttcatttctttattttttctcaaataagaaagtattttatttaag 60
||||||||| |||||||||||| | ||||||||||||||||||||||| ||| |||||
Sbjct: 210 atcttaaagctgcttttcatttat---ttttttctcaaataagaaagtatattacttaag 266
Query: 61 gacaaaaaaaaaaaaaccttgtagttgtactataaaagtaaagcaccgtgcacttaatga 120
||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gac------aacaaaaccttgtagttgtactataaaagtaaagcaccgtgcacttaatga 320
Query: 121 tactagcattgaatattatactcagctctactaaaattgataacagagagtatttttcca 180
|| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 321 tagtagcattgaatattatactcagctctactaaaagtgataacagagagtatgtttcca 380
Query: 181 tcaattccatccaagtaaaaactaataatgagatattgtatctaatgaagttttactaaa 240
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tcaattccatccaagtaagtactaataatgagatattgtatctaatgaaattttactaaa 440
Query: 241 ttgctgggtataattactgtattgttttaagtactgttgcttagttatacataacaacaa 300
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 441 ttgctgggtataattactgtattgttttaagtactgatgcttagttaaacataacaacaa 500
Query: 301 aaatggtagccagagatgcctagcttttctctttgggactatttaagac 349
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatggtagccagagatgcctagcttttctctttgggactatttaagac 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space: 251600
Effective search space used: 251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
