BAC Information

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BAC

Clone NameMSMg01-278D14
Chromosome1 (Build37)
Map Location 27,969,266 - 27,969,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D14.T7 (MSMg01no278_d14.b1)MSMg01-278D14.TJ (MSMg01no278_d14.g1)
ACCAG415906AG415907
length7281,310
length of high quality
(start - end)
315 (45 - 359)---
definitionCHROMAT_FILE: MSMg01no278_d14.b1 PHD_FILE: MSMg01no278_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:30 2005CHROMAT_FILE: MSMg01no278_d14.g1 PHD_FILE: MSMg01no278_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTCTGCATGTAATGGCCATTGTGCAGAAAACAAATAGCAAGAAA
TGGTGGCCAAGAGGTGGAGAACGGGAAGTCCTTATTTATGTACTGATGAT
ACAGTGAGGAAGATGATGGAGAAGAAACAGAAGAAAAAGTAGTAGTAGAA
GAAGAGGAAGATGAGGAGGAAAGGGGAAGAAAAGTAGAAAGAAAGAAGAA
ACAAACAAAGAAGTGAAATAGAGAAGAGGAGGAGAAGGAGCTACTATGAC
CCAGCTACACCCTTTCTTAGAATTTTTGGAATGGTTCCAAGTCAATATAG
CACAGAGATCCTCACTAATTCCNTGGCAATTCCTCAATTGACAGCACTAG
AGGTCATTATGTGAAGCAAAATACACTAAAAAAAAAAGTTATTTTTTTCC
TCATTTTAAAATTTGATTTAAAGTGCACATGTCTAGAAATAGAAGCTTAG
AATGAAAGGAAAAAAAATTATCTTACTGTAGAGGGTAATGGTGGACAGTG
GATGGTGATGAGAGTCACATGACAAGGAAACAGATGGGAAATATGGATGG
CAGAAGGGACCAGAAAGAGGGAGTCAACAGCAGTAGCAAAAGACGATTTA
TAGCAAAGCATAATTACACACGTGAATACCCACAACAAACCCCAAACTTT
GTCTATACAAAATATAGGTAGCATCATG
CCCCCACCATCTTTCTCCTCTCTCTTCCCATAGTATAGAACTTTCATTCG
CATATTCGATATTCTTACTGGGCGCGCACCAAAGAATAGAGCACGCACGC
CCCGGGGTGGACCGGCCTGCGTCTCTCGCACATATTATCGTTGCAACTCC
TCTTATAACGTATATTCCTGTGTATTCTCGTCTACTTACTCCGGCCGCGC
GTTNTATATTATGGATGACCCCGTGAGTACGAGAGTACGCTGTGTCGACG
ACCCATAGTATAAATAGTGCGTTATGCGGGACGGATGCCATATCTGCACG
ACACATCCGCGCACAAGGTTTCGCGCCCGTTATCTGCCCGCTGATAGATA
CGTACATTATCACGCTTATTCATCGCGCCTCAGTGCAAAATCGACAAGGC
ATACTCCACTATCCCTCCTATGCGTGGTGAGCGTGTTACTGCCCTCGCAT
GGCAATGCCAGTACTGCTACACCCCCACGGGAATCACAGCATAATATCAA
TGTCAGATCAAAAGTCGTACGGTCAACAGTAACGCCCTCTCGAATGCCTT
GTGTATGCTACATAGTGCGTGGGGGCGGACATGCGACCTAGTAGATGATA
TATGTGTACGCGGTGAGAGGGGATCGGCGAGAGTACAGATTGACAACAAC
AACTCGCGCCGCGCCAGCGTATGATTGAATGATAGACGGTGAGAATCAAT
AGTGTGTACACGTAAACCTGGAGTAATAATACGCGGAGATATTAGAAATT
ATATGGTCGGCGTGGCTTGAATATTGTTACGCGCACTGTCGAAACATCGC
ACGCATGATAATAAAGGTCGATGAGTCAGGTATATATTTACAAGCCGGGG
AGACGATGATGTGTATACGATTGTTATCCAAACGATTTATAGACCTCGTC
TTGACGAACTCGCGTTAATTTGTAATTCTTAGTCTGCGCTGCGAGACGCG
CCGCGCGCCGCGCGGGCAGTGATGCGATATTTGGATATTATATTATCGGC
GGATTGACGCGTGCGCGAGAGTGATATGGGTAGCGAGTAACATCCCATGA
TACTGAGCTCCAGCACGTCGTGTTTTATATCTGCTCCGTACGCATATTCC
GAAACATAATCGTAGATAACGAAGATGCACATTGTAGACACAGTACTGAA
TGGTTGGATGGAGCGGGGATGACTCTTATGTGATGGCCTCGCCACATGTT
CACGCGCTATTTCTATGATAATATGCTCTGATACTAAGTGCGGTCAAGCG
TGACTCTTCTATATCGAATGTAATGAGNCTGCTGTGTGNTCGTGCATGTG
AGCGTACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d14.b1 MSMg01no278_d14.b1 CHROMAT_FILE:
MSMg01no278_d14.b1 PHD_FILE: MSMg01no278_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:30 2005
         (315 letters)



>mm_chr1_27969265_27969979
          Length = 715

 Score =  569 bits (294), Expect = e-166
 Identities = 306/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattccattctgcatgtaatggccattgtgcagaaaacaaatagcaagaaatggtggcca 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aattccattctgcatgtaatggccattgtgcagaaaacaaatagcaagaaatggtggcca 252

                                                                       
Query: 66  agaggtggagaacgggaagtccttatttatgtactgatgatacagtgaggaagatgatgg 125
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaggtggagaatgggaagtccttatttatgtactgatgatacagtgaggaagatgatgg 192

                                                                       
Query: 126 agaagaaacagaagaaaaagtagtagtagaagaagaggaagatgaggaggaaaggggaag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agaagaaacagaagaaaaagtagtagtagaagaagaggaagatgaggaggaaaggggaag 132

                                                                       
Query: 186 aaaagtagaaagaaagaagaaacaaacaaagaagtgaaatagagaagaggaggagaagga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aaaagtagaaagaaagaagaaacaaacaaagaagtgaaatagagaagaggaggagaagga 72

                                                                       
Query: 246 gctactatgacccagctacaccctttcttagaatttttggaatggttccaagtcaatata 305
           ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 71  gctactatgacccagctacaccctttcttagaaatattgaaatggttccaagtcaatata 12

                     
Query: 306 gcacagagat 315
           ||||||||||
Sbjct: 11  gcacagagat 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)