BAC Information

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BAC

Clone NameMSMg01-278F04
Chromosome1 (Build37)
Map Location 54,821,547 - 54,821,858
singlet/doubletsinglet
Overlap geneAnkrd44
Upstream geneStk17b, Hecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278F04.T7 (MSMg01no278_f04.b1)MSMg01-278F04.TJ (MSMg01no278_f04.g1)
ACCAG415977AG415978
length722726
length of high quality
(start - end)
317 (45 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no278_f04.b1 PHD_FILE: MSMg01no278_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:37 2005CHROMAT_FILE: MSMg01no278_f04.g1 PHD_FILE: MSMg01no278_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGGTGTGTGCCTCCGTGCCTGCTCCTTCTTTCGTTCTTGAATAGC
ACAGACCTTTGAGTAGGCTCAAACCAATTACATCTTCGCATACAATGTAC
ATGGAATGACTCAAAGAACCCGTGAGGGTCTAGCTTATGCTTTGCTAATG
TGTGGTTAAAATATTTTTATGACCCAAAGAAGTCAAATCATTATTGCTCA
TGCCATCAGGTTATAAATAGGGTGACTTACAATCCTTAGGAGACAGGGGA
TAAAAGCTGGGGCAGGTAGCTTGAGTCGGCACCACGTAACTGAAAATATT
TTTCTATATTTTTTATTCCGCCCCCCCCAATTACATTTTGATAAAGCAAG
CTATACCTCTTCCCCCCACCCCCTCAGACTCCCATACAAACCGTAGGTCT
TGGAACCAGTATTTGTCTCCTGCCCTTCAATTAGCTGCAACATTTATAGC
AATGAACTTAAGCTTTAAACGATCTTCAATTATAAAATAAAGGCCAAACA
CATGTGCCATAGTGAACTAGGGAACAGATCTCAAATGCCCACAAAAGCCG
AGATTAAGAAGGTTTTCTATTTAGTGAATGATTTAGGGGAGTTAAAACAT
GGAAACATAAAAAAATTGCCTTTTAATGGATTAAAACCCAACACGGCTAT
GGTTATTTCAGATTACACCGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTCAGGACTACCAAAAGTAA
GTTTATATAAAATTGAAAGCGCCGGGCATGGTGGTGCATGCCTTTAATCC
CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTG
TCTCGAAAAACCAAAACCAAAAACAAAAAACAAAAAAAAAAATTGAAAGC
AAATGGTTTACTATTCAAAATTCAAAAACAAAGGCTGAGACTCAGGACCA
AGAATATGACAGTTTGTTTTTGCTTCCCTCCCTCTGTCATCCCTGCAGCT
GACAATGCTGGGATCTATGGCCCCCAGAAGCAATGATGCACAGCTCTCGT
GACCATTTATTCTAAAATGAAAATAGAGTTCAGTATTAAAAACCTCATTA
AAATTATATAGTCCTTCATACCTCATCTTTACAAGCATTGCATACTCAAC
AATTTGATCTATTTTTAGAAATCTGATGCCAAGCTTTGAGACAAGCTACA
ATAGTGTACACTGACCCCCTCCACTGATTCCATTAAGGGCCTCTGTGTCT
GTAAGAGACTCTGGAACACCACTCCCATGAGGTCCCAAGTAGGTGACATC
CAGACACCAAAGTGGAAAAGACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_f04.b1 MSMg01no278_f04.b1 CHROMAT_FILE:
MSMg01no278_f04.b1 PHD_FILE: MSMg01no278_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:37 2005
         (317 letters)



>mm_chr1_54821344_54822060
          Length = 717

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaggtgtgtgcctccgtgcctgctccttctttcgttcttgaatagcacagacc 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattccaggtgtgtgcctccgtgcccgctccttctttcgttcttgaatagcacagacc 456

                                                                       
Query: 64  tttgagtaggctcaaaccaattacatcttcgcatacaatgtacatggaatgactcaaaga 123
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tttgagtaggctaaaaccaattacatcttcgcatacaatgtacatggaatgactcaaaga 396

                                                                       
Query: 124 acccgtgagggtctagcttatgctttgctaatgtgtggttaaaatatttttatgacccaa 183
           ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 395 acctgtgagggtctagcttatgctttgctgatgtgtggttaaaatatttttatgacgcaa 336

                                                                       
Query: 184 agaagtcaaatcattattgctcatgccatcaggttataaatagggtgacttacaatcctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agaagtcaaatcattattgctcatgccatcaggttataaatagggtgacttacaatcctt 276

                                                                       
Query: 244 aggagacaggggataaaagctggggcaggtagcttgagtcggcaccacgtaactgaaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aggagacaggggataaaagctggggcaggtagcttgagtcggcaccacgtaactgaaaat 216

                       
Query: 304 atttttctatat 315
           ||||||||||||
Sbjct: 215 atttttctatat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)