BAC Information

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BAC

Clone NameMSMg01-278F06
Chromosome1 (Build37)
Map Location 29,929,401 - 29,929,704
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623924, EG433283, LOC100040665
Downstream geneLOC665944, EG624138, LOC100040699, Phf3, EG638995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278F06.T7 (MSMg01no278_f06.b1)MSMg01-278F06.TJ (MSMg01no278_f06.g1)
ACCAG415981AG415982
length777727
length of high quality
(start - end)
313 (47 - 359)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no278_f06.b1 PHD_FILE: MSMg01no278_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:38 2005CHROMAT_FILE: MSMg01no278_f06.g1 PHD_FILE: MSMg01no278_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTTTGTCAAAAACCACCACCACCACCACCACCCATAAAAAACA
AACAAACAAACAAACAAACAACCCAACAAAAAACCCAAATTCTTTTTTAA
AATGATTTTTTTCCCTATCTAGGTATTGATTTGTTAAAGCAAATAAAGTC
TATTAGCTATGTGGGACTAAAGTTAGTTTCTTCTTTTCTTTCATTTCTAG
GCATTATTTTTACTCTTGGTCACTTCAATCAGATTAGAGTTTCTGAATGG
TGGGTAAATTTACACAATTATTTTTAAATTGAAGGGCTGCCATCACTGGA
AAGAGAGGTTTTTGTTACACCCCCCCCCCCTATGCCCCAGTACAGGGGAA
CTCCAGGGCCAAAAAGGGGGAGTGAAAGAAAAGGGGAGTGGGGGTGCGCC
CGTATTTTTTTTTAACTCGTTTCCCCTCTATTTATTTCCTTATTTACACT
ATCTTTCACAATATATTTCTTTCTCTTTATTCTTCCTTATCCCATCTTAT
TTCTTAATATTTTCTTAACATTTTACTATCCTTTTTTTTTAACTATTCTT
TTCCCCTTCCGTCCTTTCTATAAATTTTATTTATTTTCTTCCATCGCCAC
ATAAAACTATTTTCACTCACAAACTTAATCAGCTATCCTCCTCCACATTT
TTTTTTAATTTTCCACATTTGTTCTTCGTTCCCGTCTCCCTTTATATATT
TTTTTATCTAGTTACATCCTCCTTTCG
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCCTAATTATCCCACTCCCC
CTTAACCCTACCTTCCTGCAGCCCCTATGAGTGTTTGGGAAAGAGAGGAG
TGGGAGAGAAACTGCATCCCACCAGTTCCAGTGTTCTGGGCAGGCAGACA
CAGGAGGACTGCCAGATGCTTTCCAAGTGGGCATCTGGCTGTGTTAAGCC
ACTGACCCCACACGGCGGGTGGTGGACAAGGGGCAGCCCCAGGTACCAGG
TTCTCAGTTTCTGGCATCCCTCTCTGGATAAGACAGACAAGGTGAGAACA
GAATAGGGGTTTTTTTTTGCCACCCCCGCCCCACCGATAAGGGAAGAAGA
GGCAAGGAGAAAGGAGGTGCTGGATGGTTCACACACAGGTGAGAGTCCTT
AGTCAGGTCCATGCCTGCAGGGTAGGAAGGCCTTCTGTTGGGAGATTACA
GCATTTTCAACAAATGGTGCTGGCACAACTGATGGCTATCATGTACAAGA
ATGCTTATTGATCCATTCCCTATCGCCTTGTACTAAAGTCCAATCTACGT
GGATCAAGGAACTTCCCATATAACCCGAGACACTGATTCTTATACAGGTA
GAAAGTACGTTAATAGCCTCTAACATATGGGTACAGGGGGAAATTTCCTG
GATAGAACAGCCATGGTTTGTCGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_f06.b1 MSMg01no278_f06.b1 CHROMAT_FILE:
MSMg01no278_f06.b1 PHD_FILE: MSMg01no278_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:38 2005
         (313 letters)



>mm_chr1_29929117_29929829
          Length = 713

 Score =  538 bits (278), Expect = e-157
 Identities = 299/308 (97%), Gaps = 4/308 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttgtcaaaaaccaccaccaccaccaccacccataaaaaacaaacaaacaaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattctgtttgtgaaaaaccaccaccaccaccaccacccataaaaaacaaacaaacaaa 529

                                                                       
Query: 65  caaacaaacaacccaacaaaaaacccaaattcttttttaaaatgatttttttccctatct 124
           ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 caaacaaaca----aacaaaaaacccaaattcttttttaaaatgatttttttccctatct 473

                                                                       
Query: 125 aggtattgatttgttaaagcaaataaagtctattagctatgtgggactaaagttagtttc 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 472 aggtattgatttgttaaagcaaataaagtctattagctatgagggactaaagttagtttc 413

                                                                       
Query: 185 ttcttttctttcatttctaggcattatttttactcttggtcacttcaatcagattagagt 244
           ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttcctttcgttcatttctaggcattatttttactcttggtcacttcaatcagattagagt 353

                                                                       
Query: 245 ttctgaatggtgggtaaatttacacaattatttttaaattgaagggctgccatcactgga 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 352 ttctgaatggtgggtaaatttacacaattagttttaaattgaagggctgccatcactgga 293

                   
Query: 305 aagagagg 312
           ||||||||
Sbjct: 292 aagagagg 285


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)