BAC Information

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BAC

Clone NameMSMg01-278G21
Chromosome1 (Build37)
Map Location 178,681,092 - 178,681,325
singlet/doubletsinglet
Overlap geneCep170
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik
Downstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G21.T7 (MSMg01no278_g21.b1)MSMg01-278G21.TJ (MSMg01no278_g21.g1)
ACCAG416056AG416057
length645915
length of high quality
(start - end)
234 (74 - 307)---
definitionCHROMAT_FILE: MSMg01no278_g21.b1 PHD_FILE: MSMg01no278_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:45 2005CHROMAT_FILE: MSMg01no278_g21.g1 PHD_FILE: MSMg01no278_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGATTGTCATTCCCGAAAGTGGCAATTACTTTCTCATTTACAGTTAGTAA
AGACATTTTACAAATGTTCCCGCTGACACATTGAAAATTAGAAGACAAAT
TAATGTAGACATTTTACTGTTAATAGCAAAATCAAACATACAAGTAATTT
GTAAAATATAAACAAGAAAAGAACAGAGAAGTTAATGTCTAATTCATGGT
AAACTCCATAAGGGCAGAAAATGTTATTTAACAACTAATGTGTACCTAGC
ATTTAGATGATGTGTCTGTTTAGCAAGTGATTAAGAATAGTTCTGAATGA
CGAGGGTTGNCTANCTTTCACANNACANAACCGAAGNCNAGAATTTCCTC
ATCCTCCACTAGAATTTCATACTTAAAAAAGAAATTCTTCAAACTGTGGT
TTCCTTGAAGTGGGCTGGCTCTTAGATAAAACTATACACATCGCCACTGA
AGATGGCTTAAAGCAGAGGAATCTATAGGGGCAATATGTATAAATCAGAG
CCTGTACTTACTCACACAACTATTTGCTCTCCTGGGGTTAGGATCTAGAC
TAATGTTTATTGGAAGATAGGAATATGCAGAGGAAGCTCATTGTTCTCTG
AAAAAAGCATATATAAACATTTTCTCTTTTTTCTGAAGAGGAATG
ATAAAATAAAANNCNNTNTNTTTTATTCCCGCGTATTTCTCGGTTATATC
AAATTTGAATGATATGGGAAGGTXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTAATAGAGTACATTGAAA
GAAGGGATGTGTAAAATACTTAGTATTTTGCTCAGAAATAATGATAAGAT
TTGGGTTTTTGAGGAGAAAGTAGGTAAATAAAAGAAAATAATATAGAAAA
GAAATAGTTAACGATGTGTTTGAATTATTGTATAAATGTGTTTGTAGGGG
GGTGAGTGTGAAAGTGAATGAAAGAGAAAAAATAGGAAAAATAAGATGTA
AATTAGGGAGTTGAAATAAGAGAAGAGAGTTTTTTTTTTTTTAGGGGGTT
AGTTTTTTATATATATGATGAGAGTGTTTTATGTTTTTCCCCCAAACAAA
CCCGCCGAGTGTTGGTTGGTGGGATTTGATGGTATGTTTGGGTTATATTT
TTAAAAAAAAAAAAAAAAAAAAGAGGGGGGTTTTTGTTTTGGGGGGGATA
ATNAATTTTATAATTAAATAGATGTTAGTTTTTGGTGAGAGGGAGTTTTT
GTTTTTTGAATGGGATTGTTATTGGGAATAATTTGGGTTAATTATTATTT
TTATATAGATAGGGTGATGTTGTTTATATAATTAGATTGATGTTATGGGA
TTTATAGGGTGTATTTAATGTGGAAGAGGGAGTTTTTGGATAGGATTTTA
TGAAGAAATATGAGTTATGATAGTATAAGAAGTAAATTGTTTAAAATTCT
AGGAGGTGGTAAGGTTGTAGTTGTTTGTTATTTGTGAGGAGTGGATAGAT
AGGGAGGTTGGAATGTAGGTAGGGTGGTAATATAGTGGGGTTTGGAAGAT
GTGTGGAGTTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g21.b1 MSMg01no278_g21.b1 CHROMAT_FILE:
MSMg01no278_g21.b1 PHD_FILE: MSMg01no278_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:45 2005
         (234 letters)



>mm_chr1_178680892_178681525
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacacattgaaaattagaagacaaattaatgtagacattttactgttaatagcaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacacattgaaaattagaagacaaattaatgtagacattttactgttaatagcaaaatc 260

                                                                       
Query: 61  aaacatacaagtaatttgtaaaatataaacaagaaaagaacagagaagttaatgtctaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatacaagtaatttgtaaaatataaacaagaaaagaacagagaagttaatgtctaat 320

                                                                       
Query: 121 tcatggtaaactccataagggcagaaaatgttatttaacaactaatgtgtacctagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatggtaaactccataagggcagaaaatgttatttaacaactaatgtgtacctagcatt 380

                                                                 
Query: 181 tagatgatgtgtctgtttagcaagtgattaagaatagttctgaatgacgagggt 234
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagatgatgtgtctggctagcaagtgattaagaatagttctgaatgacgagggt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)