BAC Information

Click to search

BAC

Clone NameMSMg01-279D01
Chromosome1 (Build37)
Map Location 31,615,245 - 31,615,549
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279D01.T7 (MSMg01no279_d01.b1)MSMg01-279D01.TJ (MSMg01no279_d01.g1)
ACCAG416618AG416619
length572788
length of high quality
(start - end)		---305 (77 - 381)
definitionCHROMAT_FILE: MSMg01no279_d01.b1 PHD_FILE: MSMg01no279_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:43 2005CHROMAT_FILE: MSMg01no279_d01.g1 PHD_FILE: MSMg01no279_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTGCGCGCTAAACATACTATATCAAAAATCCGCGAATAATGGGTA
CGAAACATGCTCAGCTGCATATGCAAAAAGATGCATATAGGAGGGGAGCT
CTTTGGTCCTNGTGGGAAAGGGGNNCCNNTTNTTNCCCCCNNNNNNNNNN
NNNNNCTTTTTGGGGGGGGCNNNAACCAGAAAAGAGGAAGCTAAGGCGTG
AGGCAAGGGTGGGTGGATGATGGGAACACTCAAAAGCAGAAAGTGAAGAA
AAAAAATTGTAAAAAAACGNAAAAGAAAAATTAAAAGGCAAAAAAAAAAA
ACCATTAAAAAAAAGGCAAAATTTCAAAAAACCTTTTAAAAAAAAAAAAA
CTTTTAAAAAAAAAAAAAAAATTTCCCACAAATGTTGGTAAAAAAAAAAA
TTTAAAAGTTAAAAAAAAAACCGGAAAAAAATTTAAAAAAAAAAACGGGG
AAAAAAAAAATTTCCCGGGAAAAAAAATTTTTAAAAGAAAAAAATTTTTT
AAAAGCCAAAAAAATTTTAAAAAAAAAAAAATTTTTTTCTCAAAAAAAAA
AAAGTCCAAAAAAAAAAAAAAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAGAAAAAGACATTGCCATTC
TTGAGCTCAGTTCACAAATGATATAACTATCTGATATATGTGTATATATA
CATATTTATGATTATAATGCCAGGTACCATATTTTTCTGTTGACTACCAC
CTTATTTATTTCAGATAGGGCCTTTCCTTGAACCAAGAGCTCATAGATTT
TGCTTGGCTTGCTGGGTAATGAGATCCAGGTATTCATACTTTGGTACCAT
TCCTCTCTCATGTGCTAGAGTTATAAATGTATGCTGCCCAACACATGCCG
CTTTCCTAATTCAGTCCTTCATGTTTTATTCGCGCTCATGTTAATAACTG
AGTCTTTCCCCTAGGTCTTAATTTTGCACATTGAAAATGTCCCTCATTTC
TAGTTTCCTACTTATGTTTCAAGTGCTGTGATAAAACCCTGGGCAAAACC
CAACTTATGAGGAAAAATTTATTTTGAATTCCTTTTCAATCCCCTGTTCT
TCTTTGAGGATTTCCCCCCCGGGGCCAAAAACCAAAAAAATTGGCGAAAA
AGGCCCCTCTTGGGTGGCCCCCCAGGGGTTATCCCCAGTTGGTTTCCCCC
CCCTTTTTTAACCCCAAAACCCCCCTCGCCCAAAAAGGGGGGGCAACCCA
CCCGTTTGTTTTAAAAAACACCCCCCCCCCTCCCCCTCTTTATTTTAGAA
AAAAAAGTGGCCCACAACAATAGGGCGCGCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_d01.g1 MSMg01no279_d01.g1 CHROMAT_FILE:
MSMg01no279_d01.g1 PHD_FILE: MSMg01no279_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:44 2005
         (305 letters)



>mm_chr1_31615045_31615750
          Length = 706

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%), Gaps = 1/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttag-aaaaagacattgccattcttgagctcagttcacaaatgatataactatctgat 59
           |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tgttagaaaaaaaacattgccattcttgaactcagttcacaaatgatataactatctgat 260

                                                                       
Query: 60  atatgtgtatatatacatatttatgattataatgccaggtaccatatttttctgttgact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatgtgtatatatacatatttatgattataatgccaggtaccatatttttctgttgact 320

                                                                       
Query: 120 accaccttatttatttcagatagggcctttccttgaaccaagagctcatagattttgctt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaccttatttatttcagatagggcctttccttgaaccaagagctcatagattttgctt 380

                                                                       
Query: 180 ggcttgctgggtaatgagatccaggtattcatactttggtaccattcctctctcatgtgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttgctgggtaatgagatccaggtattcatactttggtaccattcctctctcatgtgc 440

                                                                       
Query: 240 tagagttataaatgtatgctgcccaacacatgccgctttcctaattcagtccttcatgtt 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagagttatagatgtatgctgcccaacacatgccgctttcctaattcagtccttcatgtt 500

                
Query: 300 ttatt 304
           |||||
Sbjct: 501 ttatt 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 706
Length adjustment: 9
Effective length of query: 296
Effective length of database: 697
Effective search space:   206312
Effective search space used:   206312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |