BAC Information

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BAC

Clone NameMSMg01-279D07
Chromosome1 (Build37)
Map Location 167,563,300 - 167,563,861
singlet/doubletsinglet
Overlap geneMpzl1
Upstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625
Downstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279D07.T7 (MSMg01no279_d07.b1)MSMg01-279D07.TJ (MSMg01no279_d07.g1)
ACCAG416630AG416631
length741359
length of high quality
(start - end)		573 (25 - 597)---
definitionCHROMAT_FILE: MSMg01no279_d07.b1 PHD_FILE: MSMg01no279_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:45 2005CHROMAT_FILE: MSMg01no279_d07.g1 PHD_FILE: MSMg01no279_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCGGTCG
AATTCTCCTTAATGGTAAACATGGGCAAGATAGTTTGACAAGACGAACAT
TTACAAAGCATGCTTTCACTTTGATTTTAAAAGCCCCCCTCCCAGGCCCT
TACCAAATAAACCAGGCTCAAGTTTTTGATAAAGGCTCCGGCTCGGTTTA
TATGACGTCTTGGACGAGTTGTTTTATGGGGCGTCTGAAGTAGTGTCTGC
CCCAGGACTTTTTTTGTGTGTTGTTCAAAGTAAAGTACTTGTTTCTGTCT
CAGAATTCAGCTAAGTAGTGGTTACCGAGAGGTCGAACTGCTAAGAAAAC
ACGGAGGGGGTTCCTCCCACTCATTCTTTTGTTGTGTAAAATGTAATTTG
TTCAAAATCCATTACTCAGTACTTTCTTTCGTGCAAAAGTTCTTAATGTA
GTAGTCTCTCGAACCAGGAGTATAGGTGAGATTCTGTTGGATTTCCAGCT
TTCATTTAAGCTCCTAGTTAATAGCTTGAAGGTGAAAATGGACAAGATTC
TTTTTTTTTTTTTTTTTATGTATCAGATGGGATCTGTTTTGTTTTTGTTT
TTGTTTTCCTGTTTCTCCTATGGAACCAAAAAGGCGTGGGTTTTTGTTTG
TTTGTTTGTTTTTGCCATTTTTTTTTCTATTGGTGCCGCCTGGATTTGTG
TTGTAAGCAAAGTACCACCAATTATAACCATAATTCATTTT

TTTCCTTCTTTCCTTTTTCCCTCTTTTTTCTTTCTCTTCCTCCCCCCCCC
CTTTTTTCTCTTCCCCTCCCCCCTCCTTCCTCTCTTTTCCCCCCCCCCCC
CTTTCCCCTTCTTCCTCCCCTTCCCCCTTTTCCCCCCCCTTCTCTTTTCT
TTCCTCCTTTCGCCTTCCTCCTTTCCCCTCCCCNNNNNNNTTGTCNTTCT
TTCTCCNNNNTTCGTGTTCTCTTGGGCCTTTTTTCCTGCTGTGCGGCGCG
CTGCGTCTCTGGTGCCTTGCGGTTTTCGTTTCGTGTGTCCGTCGGGGTTC
CTGCCTGGTTTTGGCGTCTCTTCCGGGTTCTTCCGTTTTTGTTCCTTGGT
TGGTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_d07.b1 MSMg01no279_d07.b1 CHROMAT_FILE:
MSMg01no279_d07.b1 PHD_FILE: MSMg01no279_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:45 2005
         (573 letters)



>mm_chr1_167563085_167564061
          Length = 977

 Score = 1007 bits (521), Expect = 0.0
 Identities = 551/563 (97%), Gaps = 6/563 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcggtcgaattc-tccttaatggtaaacatgggcaagatagtttgacaagacgaac 74
           |||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattcggtcgaattcgt-attaatggtaaacatgggcaagatagtttgacaagacgaac 719

                                                                       
Query: 75  atttacaaagcatgctttcactttgattttaaaagcccccctcccaggcccttaccaaat 134
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 718 atttacaaagcatgcttttactttgattttaaaagcccccctctcaggcccttaccaaat 659

                                                                       
Query: 135 aaaccaggctcaagtttttgataaaggctccggctcggtttatatgacgtcttggacgag 194
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aaaccaggcttaagtttttgataaaggctccggctcggtttatatgacgtcttggacgag 599

                                                                       
Query: 195 ttgttttatggggcgtctgaagtagtgtctgccccaggactttttttgtgtgttgttcaa 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgttttatggggcgtctgaagtagtgtctgccccaggactttttttgtgtgttgttcaa 539

                                                                       
Query: 255 agtaaagtacttgtttctgtctcagaattcagctaagtagtggttaccgagaggtcgaac 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agtaaagtacttgtttctgtctcagaattcagctaagtagtggttaccgagaggtcgaac 479

                                                                       
Query: 315 tgctaagaaaacacggagggggttcctcccactcattcttttgttgtgtaaaatgtaatt 374
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcctaagaaaacacggagggggttcctcccactcattcttttgttgtgtaaaatgtaatt 419

                                                                       
Query: 375 tgttcaaaatccattactcagtactttctttcgtgcaaaagttcttaatgtagtagtctc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgttcaaaatccattactcagtactttctttcgtgcaaaagttcttaatgtagtagtctc 359

                                                                       
Query: 435 tcgaaccaggagtataggtgagattctgttggatttccagctttcatttaagctcctagt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcgaaccaggagtataggtgagattctgttggatttccagctttcatttaagctcctagt 299

                                                                       
Query: 495 taatagcttgaaggtgaaaatggacaagattcttttttttttttttttt----atgtatc 550
           |||||||||| ||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 298 taatagcttggaggtgaaaatggacaagattctttttttttttttttttttttatgtatc 239

                                  
Query: 551 agatgggatctgttttgtttttg 573
           |||||||||||||||||||||||
Sbjct: 238 agatgggatctgttttgtttttg 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 977
Length adjustment: 10
Effective length of query: 563
Effective length of database: 967
Effective search space:   544421
Effective search space used:   544421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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