BAC Information

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BAC

Clone NameMSMg01-279G24
Chromosome1 (Build37)
Map Location 131,435,916 - 131,581,858
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneCxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279G24.T7 (MSMg01no279_g24.b1)MSMg01-279G24.TJ (MSMg01no279_g24.g1)
ACCAG416802AG416803
length756763
length of high quality
(start - end)		318 (45 - 362)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_g24.b1 PHD_FILE: MSMg01no279_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005CHROMAT_FILE: MSMg01no279_g24.g1 PHD_FILE: MSMg01no279_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,435,916 - 131,436,227)(131,581,572 - 131,581,858)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTCTGGATTCGCCTGTGTGTGGTGATATTATTTTGATCTACACTT
GATGGTGTATGCAGCAACGACTGGTATAGAGTATCCTTCTGACCTCCACA
TATAATTGTCTAGCACTTATGCTAGGAAGAGAGTAAGCTCCTCCACTGGG
GGCCCTGGGTTCCATTCAATAGATGACCGTGAGCATCCACTTCTGTATTT
GTCAGGCACTGGCAAAGCCTCACAGGAGACAACTATATCTGGGTCCTTTC
AGCAAAATCTTTCTGGCATATGCAATAGTGTCTGCATTTGGTGGCTGATT
ATGAGATGGATCCCGGGTGGGGCAGCCTCTGGATGGTCCATCCTTTTGTC
TTAGTTCCAAACTTTGTCTCTGCAACTCCTTCCATGGATATTTTATTCCC
TATTCTAGGGAGGAATGAAGTATCCAAGCGTTGGTCTTCCTTCTTGATTT
TCTTGTGTTTTGGAAATTGTATCTTAGGTATTCTAGGTTTCTGGGCTAAT
ATCCACTTATCAGTGAGTGCATATCATGGGACTTTTATGTGATTGGGTTA
CCTCACCACCTACAACTTGTTCTATTCTCTCAGTTATCTTCCTTGTTTTG
GTGATGAAATAACAGACAAGACTCATGTTAAGAGAGGAGGATTGCTTTAG
ATTACAGTCAAGGGATATAGTCTATCATGCATGTGAAGGCATGGTATCAG
AGGCAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGCTGCTGTCTCTGACACCTT
GAGGTATTCTATGCTCCCCTTGTGAGACCTTGCTTGATTAGCTTTCTGCC
TACTAGCATCCCATTTTGTTTCCAAAACCAGCATATATGAGATTCTGTAA
TTTTTAATAAGTGTGCTTGCATGAGCCATCAGCATGTGTGAGATTCCCCA
GTGACAAACTTTCTTATCTTCTCCCATCCTGGTCATCTCATTCCTGGAAA
CCTGTTGCTGAAGAACAACCTGCTGCTCTATGTCATGGAATAAAATAAAA
TCTTACAAAATAGATTAATAAAATCTCCCTGACATGGAAAGCAAAGCCAC
CCATAAGGGTAGGAAAATTGTTCCTCACACTTAGTGAAATTATTGACATT
GGAAAGGTCTAATTCGGAGATGAAAATAAGAAGCCTTGTATGTAAGGGAT
ATTGTGTGACAACTCAGAAGAACTCTAACTCAATGCTCCTGTCAATACTT
GAGCTTTGTTACTCCTGATACACTTCACCTCAGCAGGCTAATTGTTCCCT
TTCCATAAGTACATGATCTGTGTCATGCCATCTCTGAAGAAATATGCTTG
GTTGAGGTATAAAAATAGTTATTTCTTCTTTCAATTGAGATCCATCCCAT
AATTAGCCTCCAAATGATGACACCATTGCATACACTAGCAAGATTTTGCT
GAAAGGACTCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_g24.b1 MSMg01no279_g24.b1 CHROMAT_FILE:
MSMg01no279_g24.b1 PHD_FILE: MSMg01no279_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:01 2005
         (318 letters)



>mm_chr1_131435712_131436429
          Length = 718

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattctggattcgcctgtgtgtggtgatattattttgatctacacttgatggtgt 64
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctggatttgcctgtgtgcggtgatattattttgatctacacttgatggtgt 264

                                                                       
Query: 65  atgcagcaacgactggtatagagtatccttctgacctccacatataattgtctagcactt 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 atgcagcaacgactggtatagagtatccttctgacctccacatatgattgtctagcactt 324

                                                                       
Query: 125 atgctaggaagagagtaagctcctccactgggggccctgggttccattcaatagatgacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 atgctaggaagagagtaagctcctccactgggggccctgggttccattcaatagatgact 384

                                                                       
Query: 185 gtgagcatccacttctgtatttgtcaggcactggcaaagcctcacaggagacaactatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgagcatccacttctgtatttgtcaggcactggcaaagcctcacaggagacaactatat 444

                                                                       
Query: 245 ctgggtcctttcagcaaaatctttctggcatatgcaatagtgtctgcatttggtggctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgggtcctttcagcaaaatctttctggcatatgcaatagtgtctgcatttggtggctga 504

                       
Query: 305 ttatgagatgga 316
           ||||||||||||
Sbjct: 505 ttatgagatgga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_g24.g1 MSMg01no279_g24.g1 CHROMAT_FILE:
MSMg01no279_g24.g1 PHD_FILE: MSMg01no279_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:01 2005
         (287 letters)



>mm_chr1_131581372_131582058
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggctgctgtctctgacaccttgaggtattctatgctccccttgtgagaccttgcttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 487 caaggctgctgtctctgacaccttgaggtattctatgctccccttgtgagacattgcttg 428

                                                                       
Query: 61  attagctttctgcctactagcatcccattttgtttccaaaaccagcatatatgagattct 120
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 427 attagctttctgcctactagcatcccattttgttttcaaaacctgcatatatgagattct 368

                                                                       
Query: 121 gtaatttttaataagtgtgcttgcatgagccatcagcatgtgtgagattccccagtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtaatttttaataagtgtgcttgcatgagccatcagcatgtgtgagattccccagtgaca 308

                                                                       
Query: 181 aactttcttatcttctcccatcctggtcatctcattcctggaaacctgttgctgaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aactttcttatcttctcccatcctggtcatctcattcctggaaacctgttgctgaagaac 248

                                                          
Query: 241 aacctgctgctctatgtcatggaataaaataaaatcttacaaaatag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aacctgctgctctatgtcatggaataaaataaaatcttacaaaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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