BAC Information

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BAC

Clone NameMSMg01-279N15
Chromosome1 (Build37)
Map Location 120,767,194 - 120,872,736
singlet/doubletdoublet
Overlap geneGli2
Upstream geneLOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1, Tcfcp2l1, LOC100041753
Downstream geneLOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279N15.T7 (MSMg01no279_n15.b1)MSMg01-279N15.TJ (MSMg01no279_n15.g1)
ACCAG417098AG417099
length770766
length of high quality
(start - end)
247 (67 - 313)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no279_n15.b1 PHD_FILE: MSMg01no279_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:33 2005CHROMAT_FILE: MSMg01no279_n15.g1 PHD_FILE: MSMg01no279_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,767,194 - 120,767,440)(120,872,446 - 120,872,736)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCCCGAGCGGCGCGGAATTCCAGTA
GGTTTCCCAAAAAGGTATCTTAGAGACCCGGTTCTGCCCAGTAGCATTGC
ATATCCAGGCACCTTTGAACATGCATAGCTGCCCAGGAAGAGAGTTCTGA
AGGTGTACAGAGGCATTTTCCCCAGTGGACTACAAGTTCATGGGCAGAGG
AGAGCCTATGGCAGATGTCACAAGTCACTTTGAACTGCTGTCCTGCTCAA
GCCAGCTACGGAGGGGATCCACCTATGGGGAACTGCACTACTTTGAGGCT
TGATTGTGGCCTTGTTTTTTTGAGGTTGCTGTGTGTCCCAAGGGAGGAGA
AGCATGTCTGTCTGACGCACGTCACGCCAAGTGGCTCTCGCTGTGACTAT
GACAGGATGGACATTCATGTTCCTGCTGCACACAGGCATTTTTGGGAAGA
GGAGACTCAGGCAGAGCCTGAGAGGCTAATGGAGTGTTTGGAAGCTGAGT
GCCCTGCAGGGGAAGGTTGCTGTGTGATGGGCAGCAGGCTGGGGTTTGAA
GACTCTTATTTTCCATTGTTAATTTGACACAAGCTAGCATCATTCAGGAG
AAAAATCTCAGTGAGATGGCCTTCTAGTCCAGGCCTGGTCTGTGTGCATA
ACCCTGGTCGCTTTTTTTGACGTGAACAATACCTAATCCCACTGATGAGC
ATTGACCCTTTCTTTCAGTGGTGGAATTTCCCGGGCTGGTATTTTTGGTT
TATCTTTTCTAAGCGTCATG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAAGCTGGCCTTG
AACTCAGAAATCCACCCAAGTACTGGCATTAAAGGCGTGCACCACCACTG
CCTGGCTGCTTTTTGTTAATCTAAACCACCCTGGGCAATGACAAAAGAAG
GAGTGGCTCATCTCTTGGTGGTGTTGCCCAGGGATAACTGAGGACCCATT
GGGAATCAATCTGAGTGTCCACTGATGGGCAAGTGGGTGTCTTCGTTAGG
ATTTTACTGCTATGAACAGACACCGTGACCAAGGCAACAATATAAAGACA
ATATTTAATTGGGGCTGGTTCTTTAGGTTCACCCCCACCACCATCAAGGC
AGGAGCATGGCAGCACCCAGGCAGGCACGGTGCAGGAGGAGCAGAGAGCT
CTGCATCTTCTTCTGAAGGCTGCTAGTGGAAGACTGACTTCCAGGCAGCT
AGGACTAGGAAGCCCACACCCACATTGACACAACTACTCCAACAAGATTA
TACCTCCAAATAGTGCCACTCCCTGGCCCAAGCATATACAAACCATCACA
GTGAGTGAGCAAAGTGTAGTCTGTAGATTGTCTGGACTATCAGTCAGCTT
TGAAGAGGGAGGAACCCTGACTCATGCTATAACCTCAACCATGGAAATAT
GGTGCCGAATGCTATACGCCAGTTACAAGGAAAAATGTAAGGTTTGAATA
ATTTTCTTTCCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_n15.b1 MSMg01no279_n15.b1 CHROMAT_FILE:
MSMg01no279_n15.b1 PHD_FILE: MSMg01no279_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:33 2005
         (247 letters)



>mm_chr1_120766994_120767640
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttagagacccggttctgcccagtagcattgcatatccaggcacctttgaacatgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttagagacccggttctgcccagtagcattgcatatccaggcacctttgaacatgcat 260

                                                                       
Query: 61  agctgcccaggaagagagttctgaaggtgtacagaggcattttccccagtggactacaag 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 agctgcccaggaagagagttctgaaggtgtaccgaggcattttccccagtggactacaag 320

                                                                       
Query: 121 ttcatgggcagaggagagcctatggcagatgtcacaagtcactttgaactgctgtcctgc 180
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttcatgggcagaggagcgcctatggcagatgtcacaagtcactttgaactgctgtcatgc 380

                                                                       
Query: 181 tcaagccagctacggaggggatccacctatggggaactgcactactttgaggcttgattg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagccagctacggaggggatccacccatggggaactgcactactttgaggcttgattg 440

                  
Query: 241 tggcctt 247
           |||||||
Sbjct: 441 tggcctt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no279_n15.g1 MSMg01no279_n15.g1 CHROMAT_FILE:
MSMg01no279_n15.g1 PHD_FILE: MSMg01no279_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:33 2005
         (291 letters)



>mm_chr1_120872245_120872935
          Length = 691

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaagctggccttgaactcagaaatccacccaagtactggcattaaaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 492 actctgtagaccaagctggccttgaactcagaaatccacccaagtactgggattaaaggc 433

                                                                       
Query: 61  gtgcaccaccactgcctggctgctttttgttaatctaaaccaccctgggcaatgacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgcaccaccactgcctggctgctttttgttaatctaaaccaccctgggcaatgacaaaa 373

                                                                       
Query: 121 gaaggagtggctcatctcttggtggtgttgcccagggataactgaggacccattgggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaaggagtggctcatctcttggtggtgttgcccagggataactgaggacccattgggaat 313

                                                                       
Query: 181 caatctgagtgtccactgatgggcaagtgggtgtcttcgttaggattttactgctatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 caatctgagtgtccactgatgggcaagtgggtgtcttcgttaggattttactgctatgaa 253

                                                              
Query: 241 cagacaccgtgaccaaggcaacaatataaagacaatatttaattggggctg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagacaccgtgaccaaggcaacaatataaagacaatatttaattggggctg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)