CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACATTTTCCCAGTGAGTGTATCTTCTTTCCTGTGTGCTGGTA
ATGAGCATATGGAAGCAGGTCTGACTGGAAGACAAGCTGTTGATTTCTAT
TGAACACTCAAAAATATAAGATATATTTTTTAACTTGAATTTTGCTCTCC
AGTAATGGCCTGAAATGAAAAAAAAAGAAAAAAGAAAAAGAAAAGAAAAG
GGGGGACATTAAAAAGTAGCATTGTAACTATTTTCTTTATAATTTTCATA
GTTAGAGTTTCAAGAAAGGTATCAAGAACCACAGAGGAAACCAGAACTCT
CACAATAGCTGCAAAAGAAGGAACATCAGACCTATCACAGTACCATGCTT
TTTATAACTTTTGCTTTGTTATTTTTAGAATCAGATAATTGGGCATAACA
TATTTAGAGCTCCAAGCCTCTAAGAAAGATTTTAAACACATAGAAAATAG
AGATTTTAAAGAACCCAACTTACATTTTTCAGTATTTTTTGAGAAATGGC
ATTGGAGAAATTGATGTACTTCTTTGAAAGATGGGCAGGGATTGAGAGAG
CCGTTGCTTTTCTGTTTTTATGACATGGGGAATTACAGGCATCTCACATA
GCTGGATCCTGTTTTCTTTATGAATCTGTTAGACTGCATGAGAAGGCTGC
TTGCTAGCAGCTTG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCTTTAAATTGCTTTTATA
GGATATTTTATCCCAGCAACATCAAAGGGAAATAAGAGAGCAGCCATGCT
GCTTCCAACTTTGCTATTTGTCTTAGTTACTGTTTTACTGCTTTGAAAAG
ACACTATGACCAAGGCAACTCTTATAAAGGACAAAATTTAATTGGGGCTA
ATTTACAGGTTCAGAGGTCCAGTGCACTATCATATAGGTGAGAACATGGC
AGCATCCAGGCAGGCATGGATTGGCAGGAGTTGAGAGTTCTAATCTTTTT
CTGAGACATCTAGGATAATACTACTGTCTCCCACGAAGCTAGGAGGAGAA
TCTCAAACCCTCCACCACAGTGACACACTTTCTCCAACAAGGTCACACCT
ACTCCAACAAGGCCACATGTCCTAATAGTGCCAATCCTTGGGACAAGCAT
GTTCAAACCACCACAACATTTAATTTCAACTTCCTTAGCCTAGAAGTAGA
ATAAGCTTACATTTTCATTTTTGCACATTGAGAACATCCAAACATTTTGC
AGCCAGAATTCCCTTTAGACACTCATGGTCATCCGTGTTTGCCTGTATGG
GATTAAGGATTACAATCCAATCTGGCCTCTTAGCCTGTTTCACATTTCCT
ATTAAGTTATCCAC

Query= MSMg01no280_a02.b1 MSMg01no280_a02.b1 CHROMAT_FILE:
MSMg01no280_a02.b1 PHD_FILE: MSMg01no280_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:45 2005
         (612 letters)



>mm_chr1_142192025_142193036
          Length = 1012

 Score = 1116 bits (577), Expect = 0.0
 Identities = 602/613 (98%), Gaps = 8/613 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagaacattttcc--cagtgagtgtatcttctttcctgtgtgc--tggtaatga 59
           ||||||||||||||||  |  ||||||||||||||||||||||||||||  ||  |||||
Sbjct: 204 ggaattcagaacattt--cagcagtgagtgtatcttctttcctgtgtgctttg--aatga 259

                                                                       
Query: 60  gcatatggaagcaggtctgactggaagacaagctgttgatttctattgaacactcaaaaa 119
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcatatggaagcagggctgaatggaagacaagctgttgatttctattgaacactcaaaaa 319

                                                                       
Query: 120 tataagatatattttttaacttgaattttgctctccagtaatggcctgaaatgaaaaaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tataagatatattttttaacttgaattttgctctccagtaatggcctgaaatgaaaaaaa 379

                                                                       
Query: 180 aagaaaaaagaaaaagaaaagaaaaggggggacattaaaaagtagcattgtaactatttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagaaaaaagaaaaagaaaagaaaaggggggacattaaaaagtagcattgtaactatttt 439

                                                                       
Query: 240 ctttataattttcatagttagagtttcaagaaaggtatcaagaaccacagaggaaaccag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctttataattttcatagttagagtttcaagaaaggtatcaagaaccacagaggaaaccag 499

                                                                       
Query: 300 aactctcacaatagctgcaaaagaaggaacatcagacctatcacagtaccatgcttttta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aactctcacaatagctgcaaaagaaggaacatcagacctatcacagtaccatgcttttta 559

                                                                       
Query: 360 taacttttgctttgttatttttagaatcagataattgggcataacatatttagagctcca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacttttgctttgttatttttagaatcagataattgggcataacatatttagagctcca 619

                                                                       
Query: 420 agcctctaagaaagattttaaacacatagaaaatagagattttaaagaacccaacttaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcctctaagaaagattttaaacacatagaaaatagagattttaaagaacccaacttaca 679

                                                                       
Query: 480 tttttcagtattttttgagaaatggcattggagaaattgatgtacttctttgaaagatgg 539
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 tttttcagtattttttgagaaatggtattggagaaattgatgtacttctttgaaagatgg 739

                                                                       
Query: 540 gcagggattgagagagccgttgcttttctgtttttatgacatggggaattacaggcatct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcagggattgagagagccgttgcttttctgtttttatgacatggggaattacaggcatct 799

                        
Query: 600 cacatagctggat 612
           |||||||||||||
Sbjct: 800 cacatagctggat 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)