Query= MSMg01no280_a06.b1 MSMg01no280_a06.b1 CHROMAT_FILE:
MSMg01no280_a06.b1 PHD_FILE: MSMg01no280_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:46 2005
(659 letters)
>mm_chr1_4324256_4325315
Length = 1060
Score = 1104 bits (571), Expect = 0.0
Identities = 634/665 (95%), Gaps = 23/665 (3%)
Strand = Plus / Plus
Query: 7 attcctgattgatacatgggcaatatactataatt-tttttaaatgttgtttatactcaa 65
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 207 attcctgattgatacatgggcaatatactataattgtttttaaatgttgtttatactcaa 266
Query: 66 gtgcatgtatatagtctgttttatttatatgtaattaagtgtctcccttgagcataaaag 125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 267 gtgcatgtatatagtatgttttatttatatgtaattaagtgtctcccttgagcatgaaag 326
Query: 126 caacaaaattgttaatatcttcatagcagttctctttccatttgaagaaaagttcaagcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caacaaaattgttaatatcttcatagcagttctctttccatttgaagaaaagttcaagcc 386
Query: 186 cctatgttaaatcattcca-cctttttaaattttgtccttcacacaatgtttgtttacct 244
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 387 cctatgttaaatcattccagcctttttaa-ttttgtccttcacacaatgtttgtttacct 445
Query: 245 agacagtttgaaaatttttaagatcatattactccctaacactgttaaagagctacctta 304
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 agacagtatgaaaatttttaagatcatattactccctaacactgttaaagagctacttta 505
Query: 305 cttagttaattcatttctttttttaccc---ccc---ctctcccccacctggattcatct 358
||| ||||||||||||||| ||| ||| |||| ||||||||||||||||||
Sbjct: 506 cttggttaattcatttctt------cccttacccgtgctcttccccacctggattcatct 559
Query: 359 cttcacccacagatagctctatacctatgaaaa----caagcatgctttgtttaggagcc 414
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 cttcacccacagatagctctatacctatg----gcttcaagcatgctttgtttaggagcc 615
Query: 415 acctttgacggtgaattgttctattccatcccatcctttcctccactgtctgccacctct 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acctttgacggtgaattgttctattccatcccatcctttcctccactgtctgccacctct 675
Query: 475 gcacacaaggtctactccaaactcatagttcagaaccatttttgccttgagtaaataagc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gcacacaaggtctactccaaactcatagttcagaaccatttttgccttgagtaaataagc 735
Query: 535 agctcatctgccagatttcactggcctagctcctgtgcatctcttacaactgtctcaata 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 agctcatctgccagatttcactggcctagctcctgtgcatctcttacaactgtctcaata 795
Query: 595 aggcaggccagattctcacacaaaacacacaaccaaaagtccacatgttcaggtcaaatt 654
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 796 aggcaggccagattctcacacaaaacacacaaccaaatgtcgacatgttcaggtcaaatt 855
Query: 655 gcaaa 659
|||||
Sbjct: 856 gcaaa 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_a06.g1 MSMg01no280_a06.g1 CHROMAT_FILE:
MSMg01no280_a06.g1 PHD_FILE: MSMg01no280_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:46 2005
(292 letters)
>mm_chr1_4497345_4498033
Length = 689
Score = 511 bits (264), Expect = e-149
Identities = 284/292 (97%), Gaps = 3/292 (1%)
Strand = Plus / Minus
Query: 1 agtggtgtggttgagaagtgggttactggaagtttatgttaacctgaaaccccccccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 489 agtggtgtggttgagaagtgggttactggaagtttatgttaacctgaaagcttccccatt 430
Query: 61 tccttcagcccttttaccccaggaatacccagagatgccacaagatccatgtttgcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccttcagcccttttaccccaggaatacccagagatgccacaagatccatgtttgcactc 370
Query: 121 ctgggggtggagatctgactgtcccagaaaatatcccagtttttccaaggtgatgccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgggggtggagatctgactgtcccagaaaatatcccagtttttccaaggtgatgccagt 310
Query: 181 attgtcagaatatggctctctattagctggtgctcaggagtgacgcaactttccccttac 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attgtcagtatatggctctctattagctggtgctcaggagtgacgcaactttccccttac 250
Query: 241 tgttttagttgcaaatcttatttttctttccccctttacacttaggactagt 292
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 249 tgttttagttgcaaatcttatttttctttccccc---ccacttaggactagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 689
Length adjustment: 9
Effective length of query: 283
Effective length of database: 680
Effective search space: 192440
Effective search space used: 192440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
