CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTCCCTGTTACACAGAAACATTTACCTCCTCCTCATGTCCTGAGG
ACACACACAAACCAAAGTATAATTTCACCAAGTTCACCCTGGAGAGCCAA
CAAGTTTATTGTGATACAGAGGATGAATTAACGGAGCGTGGGTGACCCCA
GGAAAACCCCAGGCAATCTTCTCTAGGCATGGACAATGCATAGATGCATA
GATGCATAGATCGGGTCCCTTTCAGTTCATCTTCCTAAGTGCTGTAGCAC
CTCTAGAAACACACTCACAACTAGGGCAAAATTACAAAGCCTGAGGTAGT
GGTTGAAATCTAAGATGAGGTTCCATGAGCCTTCCCATGCTCTCTTTCTC
TGAGGGATGTCAAGTCAACAACCCCGCTCTCTTTTTTTTCCCCCTATGCT
TGTTGAAATTAAGATGTAATTTCAAGAGGACCACCACGTGCCACCACATG
GTATGATAGAGCAAAAAAAACACCCAGAGGCCCTGGTGCCACTAAGATGA
GCAAGTAAGTGATGGAAAGATGGGAGGGAAAAAAAAGAAGAAGCAAAACA
CTGTATGTACCACGATGAGAAACAGAACCAGAAATAAGAAAGTAGTGAGG
AACAGCTGGATATGAGTAGTCTGCACTGCCACCTGAGGTTGGGATGAGGT
CCTAGTCCCTACTGAAGATGAGGACCGTGTCTGGGTCAATATCCA

ACAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACATCTCTGAAATATAAACTGG
TACAGCCTCTCTGAGGCACGGTTTGACCAATACCGAATGGCAAAAAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTCCCGACCGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATTATATCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATGCAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAC
ACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATT
AGCCCAGAACCTAGGATACCCAAGATATAAGATACAATTTGCTAAA

Query= MSMg01no280_a07.b1 MSMg01no280_a07.b1 CHROMAT_FILE:
MSMg01no280_a07.b1 PHD_FILE: MSMg01no280_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:46 2005
         (644 letters)



>mm_chr1_46992071_46993113
          Length = 1043

 Score = 1035 bits (535), Expect = 0.0
 Identities = 607/651 (93%), Gaps = 34/651 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttccctgttacacagaaacatttacctcctcctcatgtcctgaggacacacac 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 gaattccttccctgggagacagaaacatttacctcctcctcatgtcctgaggacacacac 920

                                                                       
Query: 65  aaaccaaagtataatttcaccaagttcaccctggagagccaacaagtttattgtgataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 aaaccaaagtataatttcaccaagttcaccctggagagccaacaagtttattgtgataca 860

                                                                       
Query: 125 gaggatgaattaacggagcgtgggtgaccccaggaaaaccccaggcaatcttctctaggc 184
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 859 gaggatgaattaacggagcatgggtgaccccaggagaaccccaggcaatcttctctaggc 800

                                                                       
Query: 185 atggacaatgcatagatgcatagatgcatagatcgggtccctttcagttcatcttcctaa 244
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 atggaca--------atgcatagatgcatagatcgggtccctttcagttcatcttcctaa 748

                                                                       
Query: 245 gtgctgtagcacctctagaaacacactcacaactagggcaaaattacaaagcctgaggta 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  
Sbjct: 747 gtgctgtagcacctctggaaacacactcacaactagggcaaaattacaaagcctgagg-- 690

                                                                       
Query: 305 gtggttgaaatctaagatgaggttccatgagccttcccatgctctctttctctgagggat 364
                       ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ------------taagatgaggttccatgagccttcccatgctctctttctctgagggat 642

                                                                       
Query: 365 gtcaagtcaacaaccccgctctcttttttttccccctatgcttgttgaaattaagatgta 424
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 641 gtcaagtcaacaaccccgctctctttttttttcccctatgcttgttgaaattaagatgta 582

                                                                       
Query: 425 atttcaagaggaccaccacgtgccaccacatggtatgatagagcaaaaaaaacacccaga 484
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 581 atttcaagaggaccaccacgtgccaccacatggtatgatagagc-aaaaaaacacctaga 523

                                                                       
Query: 485 ggccctggtgccactaagatgagcaagtaagtgatggaaagatgggagggaaaaaa---- 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
Sbjct: 522 ggccctggtgccactaagatgagcaagtaagtggtggaaagatgggaggaaaaaaaaaaa 463

                                                                       
Query: 541 -------aagaagaagcaaaacactgtatgtaccacgatgagaaacagaaccagaaataa 593
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaagaagaagaagaagcaaaacactgtatgtaccacgatgagaaacagaaccagaaataa 403

                                                              
Query: 594 gaaagtagtgaggaacagctggatatgagtagtctgcactgccacctgagg 644
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaaagtagtgaggaacagctggatatgagtagtctgcactgccacctgagg 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)