BAC Information

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BAC

Clone NameMSMg01-280E12
Chromosome1 (Build37)
Map Location 133,246,056 - 133,246,344
singlet/doubletsinglet
Overlap geneSrgap2
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream geneLOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280E12.T7 (MSMg01no280_e12.b1)MSMg01-280E12.TJ (MSMg01no280_e12.g1)
ACCAG417414AG417415
length745734
length of high quality
(start - end)
---289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no280_e12.b1 PHD_FILE: MSMg01no280_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:05 2005CHROMAT_FILE: MSMg01no280_e12.g1 PHD_FILE: MSMg01no280_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCAAGGATCCGCGG
AATTCCTTCCTTTACTCCTACCTTCCTTCCTTCCTTCCTTCCTTACTTAC
TTCCTTCCTTCCTTCTTTTCTCCCTTCATTCCTTCCTTCCTTCGTTTTTC
AAGTCAGAGTTTCTCTATGTAGCCCTGGCTGTCCTGTAACACTCTCTGTA
AACTAGGCTGGCTTCTGGGGTTAAAGGCAAGGGCCCAGAAATGCCAGTTT
TTCTGGATTCATTAGCAGAATAATCAATCATTATCCTGGTAGACACATAA
ACTGCCTAGGTCTTTAACCTTTTTTTTTCATTTCGCTCTTCTTCCGGTCT
TAAAAGATTTTTTTTTTTCATCCCCCCCCCCCCCATTCATGTTTCTTACT
CTTTCATTCTTGACCCCCCCCAAAAAGAAAAAAAGCTTACGAGGGGGGGA
ATCACTTGCAATGGATAGTGTGTTCCGCGGCTTTACCATGTTTGCCCGTG
CATTCTCGCCCGTTTGGTCTGTGACGACCGCCCTATTCCCCGTTCTGTCC
CCGTTCCATTCCCCTTTTTCCCCTTTTGATCCCCTTTTTTATTTTCTCAC
TTCCCGTCCCGTTTTTTTTCATGCTCCCCTTTATTTGGATTTTCCCCCGT
GTCACTCCCCTTTTGTCTTCATTTCTTGCCCATTTTTCCCCCCTTTTCCC
CTCATTCTTCATTTGTTTGCCCTCTTTTTTGATTTTCCCCCCCTT
ACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAATTTCATAGGGGGGCAAAAAACAT
TGTTGTACATCTCCATGATCCGCTGCTTGTCACTGGTGGCATCTAGGTTT
TCTACTGCATTTTCAATAGCATCCAGACCTTCATGTTTTGACTGTTCCAG
ATTTAATTCAGCAGATAGGAAAGTGCGTAGAGCCCGGTTCAGGCTAGCAT
GGTAGCCTAGGTCACAACATTGCTGTGGGAAGGAGAAGGCACATAAGCAC
ACCACAGACATCTCAAGGTCTGACAAGAAGGGAAGTGGTCTTGGGGTAGA
TCTGACCATATCATGTTTACTCGCACCCTCACCCGAAGGAAGCTGAGATT
ACAATGTCAAAACCTGGGCAACATTCCTTAAATCTTGCTCCCTAGTTCAC
TGGTTAGTACACCATGCAGGGCACTAAGGTGGTTAGACAGAAGAAGATTC
ATAAAAAACAATGATAAGAGTTAACCAAGTGATGTTTCATAAAAATGAGA
ATGTCCACAAGTTAGAGAATTCCGTTCTGTTTTCTGGTTTGTCTGGTGAA
TGCCATAACAACAAAATTCAACAATAATAATAATACTGCCTGCTATGATT
CTCTGAGGGTTCCTGTGGTTAGAAGTCACTACATAGTAAGCTTTCCAGGC
CAATGGAACAGCCAGGAGTCAAAAATCTGGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_e12.g1 MSMg01no280_e12.g1 CHROMAT_FILE:
MSMg01no280_e12.g1 PHD_FILE: MSMg01no280_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:05 2005
         (289 letters)



>mm_chr1_133245856_133246544
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttcataggggggcaaaaaacattgttgtacatctccatgatccgctgcttgtcact 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 201 aaatttcataggggggcaaaaaacattgttgtacatctccatgagccgttgcttgtcact 260

                                                                       
Query: 61  ggtggcatctaggttttctactgcattttcaatagcatccagaccttcatgttttgactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtggcatctaggttttctactgcattttcaatagcatccagaccttcatgttttgactg 320

                                                                       
Query: 121 ttccagatttaattcagcagataggaaagtgcgtagagcccggttcaggctagcatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagatttaattcagcagataggaaagtgcgtagagcccggttcaggctagcatggta 380

                                                                       
Query: 181 gcctaggtcacaacattgctgtgggaaggagaaggcacataagcacaccacagacatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctaggtcacaacattgctgtgggaaggagaaggcacataagcacaccacagacatctc 440

                                                            
Query: 241 aaggtctgacaagaagggaagtggtcttggggtagatctgaccatatca 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggtctgacaagaagggaagtggtcttggggtagatctgaccatatca 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)