Query= MSMg01no280_j09.b1 MSMg01no280_j09.b1 CHROMAT_FILE:
MSMg01no280_j09.b1 PHD_FILE: MSMg01no280_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:27 2005
(549 letters)
>mm_chr1_160107722_160108670
Length = 949
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 1 tccttttcaataacatgcagagtcaaaggtagagggatagaatgacggaggcaggactcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 692 tccttttcaataacatgcagagtcaaaggtagagggatagaatgacggaggcaggagtcc 633
Query: 61 cacccaagaggaaggaggttctgaaaaggaggtgtagcctgagggttgaaccttaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cacccaagaggaaggaggttctgaaaaggaggtgtagcctgagggttgaaccttaaagag 573
Query: 121 tgaaatctgggttttatgagcaatggccttgtcaaggaagaaagattcaaaagtcctggg 180
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 572 tgaagtctgggttttatgagcaatggccttgtcgtggaagaaagattcaaaagtcctggg 513
Query: 181 tatctgtgagaaacagcagatgagtctgtggtaagggggctaaatgcatctaacacgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tatctgtgagaaacagcagatgagtctgtggtaagggggctaaatgcatctaacacgtca 453
Query: 241 gactgaacacgaaagagcagatggttaagaggactccagtatacttgaacactgggaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gactgaacacgaaagagcagatggttaagaggactccagtatacttgaacactgggaacc 393
Query: 301 ttgtttgtcactatcaggtgttcttaggtcttagtggaggatggtggatggctcgaagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgtttgtcactatcaggtgttcttaggtcttagtggaggatggtggatggctcgaagtt 333
Query: 361 ggcatgctggaattttagtgtacggtggtaagaggggtcgagagtctgtctataaagcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggcatgctggaattttagtgtacggtggtaagaggggtcgagagtctgtctataaagcct 273
Query: 421 tttcagtaacaatgaagtgaaagacaaaaggtagttagtggagagacaatcaatgagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttcagtaacaatgaagtgaaagacaaaaggtagttagtggagagacaatcaatgagatg 213
Query: 481 ggataagtgtttaaaaaacaaaacaaaacaaaacgaagtg-aaaaaaaaaacaggcatga 539
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 212 ggataagtgttttaaaaacaaaacaaaacaaaacgaagtgaaaaaaaaaaacaggcatga 153
Query: 540 ctttacagtt 549
||||||||||
Sbjct: 152 ctttacagtt 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_j09.g1 MSMg01no280_j09.g1 CHROMAT_FILE:
MSMg01no280_j09.g1 PHD_FILE: MSMg01no280_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:28 2005
(276 letters)
>mm_chr1_159979534_159980209
Length = 676
Score = 526 bits (272), Expect = e-154
Identities = 275/276 (99%)
Strand = Plus / Plus
Query: 1 ccatttggtaaaatggttgctgtaatgcaatttgttgccaggctcatccttattctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatttggtaaaatggttgctgtaatgcaatttgttgccaggctcatccttattctgtct 260
Query: 61 gggatcacttggagctgccgttttcctcttattctttgctttccttagccagagttgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggatcacttggagctgccgttttcctcttattctttgctttccttagccagagttgggg 320
Query: 121 gcagggtgcacatggttgttagtgatgagcagctgtctttagatttcgattctctgcatt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcagggtgcacatggttgttagtgatgagcagctgtctttagatttcgattctctgcact 380
Query: 181 gctccttttcaacatgctcatgggtagtcagctttggtttaacatttgtctgttgtgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccttttcaacatgctcatgggtagtcagctttggtttaacatttgtctgttgtgaag 440
Query: 241 cccatacagggcagaggcatagtcttctcttgctga 276
||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccatacagggcagaggcatagtcttctcttgctga 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
