Query= MSMg01no280_l07.b1 MSMg01no280_l07.b1 CHROMAT_FILE:
MSMg01no280_l07.b1 PHD_FILE: MSMg01no280_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
(574 letters)
>mm_chr1_189161857_189162830
Length = 974
Score = 1004 bits (519), Expect = 0.0
Identities = 558/571 (97%), Gaps = 2/571 (0%)
Strand = Plus / Minus
Query: 5 gaattcaataaatt-ctacacttctgtgttttattctcaggacagttgtgagcttaccat 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattcaataaattccaatacttctgtgttttattctcaggacagttgtgagcttaccat 715
Query: 64 tttataaaaaaataaaacccaaaattcctccccctgcctgcccctatcacttgtgtgagc 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tttataaaaaaataaaaagtaaaattcctccccctgcctgcccctatcacttgtgtgagc 655
Query: 124 ttgtgtgcataggtgtgtgtccatgtgtagaggccagaaatccacctcagggaaagttcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttgtgtgcataggtgtgtgtccatgtgtagaggccagaaatccacctcagggaaagttcc 595
Query: 184 ttaggcaagtattagtcttctgttttgaaatgaggtcttttgttgctggcctggcgtccc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttaggcaagtattagtcttctgttttgaaatgaggtcttttgttgctggcctggcgtccc 535
Query: 244 acgaatgtgtctcagcccgtgcagcaccaggaccacggtcacgtgctgccaggccttgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 534 acgaatgtgtctcagcccgtgcagcaccaggaccacggtcacgtgctgccaggccctgct 475
Query: 304 cttctgtcgggatgttaaagtcatgtccgcacacgcgttaaaccactctactgactgagt 363
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cttctgtcgggatgttaaagccatgtccgcacacgcgttaaaccactctactgactgagt 415
Query: 364 tgctctcccggctctgctctcatgcgtttcactccactgctatcagggtttaccttctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgctctcccggctctgctctcatgcgtttcactccactgctatcagggtttaccttctcc 355
Query: 424 caagcctacacagaaaacctcagctacagggcagggatgcctgctgaagacgagaggaag 483
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 354 cgagcctacacagaaaacctcagctacagggcagggatgcctgctgaagacaagaggaag 295
Query: 484 agatcatcctgaaaacacgaaaatgctggaaactggttttatttggtttttttagtgtgt 543
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 294 agatcatcctgaaaacacgaaaatgctggaaactggttttatttggcttttt-agtgtgt 236
Query: 544 gtccatggtctcgctctttgtgtttgtgtgt 574
| |||||||||||||||||||||||||||||
Sbjct: 235 gcccatggtctcgctctttgtgtttgtgtgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_l07.g1 MSMg01no280_l07.g1 CHROMAT_FILE:
MSMg01no280_l07.g1 PHD_FILE: MSMg01no280_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:37 2005
(346 letters)
>mm_chr1_188976510_188977255
Length = 746
Score = 646 bits (334), Expect = 0.0
Identities = 343/346 (99%)
Strand = Plus / Plus
Query: 1 aggcagtgaccaaagcgccagcactagtgggcagattgcacttacagcctgcttgtctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcagtgaccaaagcgccagcactagtgggcagattgcacttacagcctgcttgtctgt 260
Query: 61 gacatctcaagtccagaaggcaagaggaatgaatagagtccttagacaatttagcaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatctcaagtccagaaggcaagaggaatgaatagagtccttagacaatttagcaatag 320
Query: 121 gaaaattaattggacacaaatctattctctgaaggaataaagggagtgatccaaattaca 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gaaaattaattggacacaaatctattctctgaaggaataaagggattgatccaaattaca 380
Query: 181 cacaccgcacacacttagagaaacttttcttaaaggccattctccaaagggcttgtccct 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaccacacacacttagagaaacttttcttaaaggccattctccaaagggcttgtccct 440
Query: 241 agtgtgaccgcaaagagatttcatgaccttttcctgtaaaaggaactgtgaacctctaca 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agtgtgaccgcaaagagatttcatgaccttttcctgtaaaaggaactgtggacctctaca 500
Query: 301 aatgtttccagttttgcaggagagcacactagatagtgaatcaggt 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtttccagttttgcaggagagcacactagatagtgaatcaggt 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
