BAC Information

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BAC

Clone NameMSMg01-288A08
Chromosome1 (Build37)
Map Location 90,124,443 - 90,285,460
singlet/doubletdoublet
Overlap geneLOC100040766, 6430706D22Rik, LOC100038822, Trpm8
Upstream geneEif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream geneSpp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A08.T7 (MSMg01no288_a08.b1)MSMg01-288A08.TJ (MSMg01no288_a08.g1)
ACCAG417959AG417960
length740745
length of high quality
(start - end)		194 (46 - 239)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no288_a08.b1 PHD_FILE: MSMg01no288_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:00 2005CHROMAT_FILE: MSMg01no288_a08.g1 PHD_FILE: MSMg01no288_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,124,443 - 90,124,631)(90,285,171 - 90,285,460)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTATAAGCATTGCATCTAAGGGGAACATCCTGCTCCTTTTACGTT
ATTTAATGGTTCAAATGGAGTCACACATTCTACCCACACTGAAGGAAGAG
TTTTAAAAAGTTTGTGAGCTCCTGGGAGGTCATCTTAGGGAGTGTTGTCA
CATGGAGTATTTATTAATCTCATCCATCTTGAAGGCANCTTGNNAGGAGN
NACATGNAANAGAAGCCACTGAGTTGAATGAAGACATGTTGGAGGAAGCA
GAGCATCTGGCACTTCTAGAGCCAGAGGATGATGGTTAGGAAGTCAACCA
CATCACCCACACCACTGGGCCCCTTTTTTGTTTTTCCCCCCCCCCCCCCC
CCCCTTNCNNCATTCTTTGGGTTCGGGACATTCCTCCCCCCTCTCCCAAC
AAAAAAAAAAAATCTTTGGGCCGGGGGGAACCCCCCCNNNNNNNNNNNTT
CCGTGCNNNCAGGTGGAGTCTTGGNCAAATNNNNNNNTAGAAAACGGGGG
TTTTCCGGGGATAATATCCCCCCAAAATTGGTTTCTCTGCGTTTCCCCCC
GTTGAATTTTTTATAAAACCCCCTTTTTTCCCCCGGGTTTTTTACCACCT
CCTATATGTTTGTTTTTCCCCCCCTTGGTGGCCCCCGTCTCCCTCTTTTT
TTTTTCCAACATTTTTTTCTTTTTGCGGGGGCGGTCCCCC

GAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCACACACTGCAGAAAAGGAAATA
GACACAATAGCAGTATAAGTATAAAATCAGGGCCAGAGTCACAGTCGTGG
GAAAGGAGTGTCAACACTTAATCCCTCAGCATCAGGACAAGGCTCTGAGA
TGCAGAAAACACAGGCACCTTCACAGAGGAACATGGTCCTTTGCACCCCT
CTTCAGGTGTAAAGTCCTCTGTACACTTTGCTCCCTGACCTATGCCCTTG
AGGGTGACTAAGAGTCATCCACCCTGTGCTCAGGGACCTGAAAATGTCTC
CTTTAGAAGTCATTATTTTTTTTTGTCCCCCCCCGCCCCATGAGCCTCCA
CATCCAGGTGGTTGCTGTGACCCCCCCAAAAAGAAAAAGATGCTGAATTA
TTAATACTAATTCATAAATTAATAAATTAATTAACAAAAATTATTAATAA
AATTTCCACCAAAATGTTAGCCTGTGACGTTAGCTGTGCGTGTCTGGGAG
TCCACCCGTGTGAGCTGTGTGAGGTTCACCGAGCAGGGCCCAACTCATCC
CATCTAAGTTGAGTCTCATAGAGCCAAGAAGGACTTCATTTGTTCAGTGG
TTGCTACACAAAATCAAAACTGAGCAGATATCCAAGTAGAACACCCGAAC
ATGTATCAAAATGTAGTTTTCAAATGATTCAAAATGACAGTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a08.b1 MSMg01no288_a08.b1 CHROMAT_FILE:
MSMg01no288_a08.b1 PHD_FILE: MSMg01no288_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:00 2005
         (194 letters)



>mm_chr1_90124240_90124833
          Length = 594

 Score =  342 bits (177), Expect = 6e-99
 Identities = 186/189 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctataagcattgcatctaaggggaacatcctgctccttttacgttatttaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctataagcattgcatctaaggggaacatcctgctccttttacgttatttaatg 263

                                                                       
Query: 64  gttcaaatggagtcacacattctacccacactgaaggaagagttttaaaaagtttgtgag 123
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttcaaacggagtcacagattctacccacactgaaggaagagttttaaaaagtttgtgag 323

                                                                       
Query: 124 ctcctgggaggtcatcttagggagtgttgtcacatggagtatttattaatctcatccatc 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcctgggaggtcttcttagggagtgttgtcacatggagtatttattaatctcatccatc 383

                    
Query: 184 ttgaaggca 192
           |||||||||
Sbjct: 384 ttgaaggca 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no288_a08.g1 MSMg01no288_a08.g1 CHROMAT_FILE:
MSMg01no288_a08.g1 PHD_FILE: MSMg01no288_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:00 2005
         (293 letters)



>mm_chr1_90284971_90285663
          Length = 693

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacacactgcagaaaaggaaatagacacaatagcagtataagtataaaatcagggcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atcacacactgcagaaaaggaaatagacacaatagcagtataagtataaaatcagggcca 431

                                                                       
Query: 61  gagtcacagtcgtgggaaaggagtgtcaacacttaatccctcagcatcaggacaaggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagtcacagtcgtgggaaaggagtgtcaacacttaatccctcagcatcaggacaaggctc 371

                                                                       
Query: 121 tgagatgcagaaaacacaggcaccttcacagaggaacatggtcctttgcacccctcttca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 370 tgagatgcagaaaacacaggcaccttcacagaagaacatggtcctttgcacccctcttca 311

                                                                       
Query: 181 ggtgtaaagtcctctgtacactttgctccctgacctatgcccttgagggtgactaagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggtgtaaagtcctctgtacactttgctccctgacctatgcccttgagggtgactaagagt 251

                                                             
Query: 241 catccaccctgtgctcagggacctgaaaatgtctcctttagaagtcatta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 catccaccctgtgctcagggacctgaaaatgtctcctttagaagtcatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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