BAC Information

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BAC

Clone NameMSMg01-288A09
Chromosome1 (Build37)
Map Location 189,806,400 - 189,967,699
singlet/doubletdoublet
Overlap geneEsrrg, 9330162B11Rik
Upstream geneSpata17, Gpatch2
Downstream geneUsh2a, Kctd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288A09.T7 (MSMg01no288_a09.b1)MSMg01-288A09.TJ (MSMg01no288_a09.g1)
ACCAG417961AG417962
length735735
length of high quality
(start - end)
329 (47 - 375)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no288_a09.b1 PHD_FILE: MSMg01no288_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:00 2005CHROMAT_FILE: MSMg01no288_a09.g1 PHD_FILE: MSMg01no288_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,806,400 - 189,806,723)(189,967,043 - 189,967,699)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGGGGTCTACGGCACACACAGGGCTATGTCTAGGGGTCAGGAG
TGTTGAGAAGGGGACTCTGGAGGCCCTGTTTGAACCTGGGGGATCTACAT
GTGAACTGTGAGCAGACATAGAGAAATCACTGTAATATAAATTACCCAGA
CCCCGAAGAGCTTCTAATTCTCTGGCAAGTCTCTAGCACTGTCCTCTCTG
CAGGGACTCTACCCTGCTTCTCTGGAGCCACTCCATTTTGTTGGATACGC
TTGAACGGACAAGTGGTACCAAGTATAGACAATGACAACTCAGCATTACG
TTTGATAATCAATTTCTTGTACGGCGAGCAGACACACTCAGCAGAGGGTT
AACATTTCAAATTCTTCCCCCCGCGGCAGTAAAACTCAGGAAGGGGTGAA
GAACGCCCTTGCCGTTCATGTGTTTAGTATCTCCATAGTCTATTGTTAGA
AATACAACCCTGTATTGACAAGTGTGGCATGGTAAGTTCAGAGCATCTTT
AATGAATGTCAGCCTCCACACAGGTAGGCATCTGCCAGCCAACAGTTCCT
GCGCCTGGGAAATATGGTACTCATTATAAAAAATATATCAAACCCTTTCG
GCTCCTAATAATTCTTCAGTTACTGTCTTTCTCCAGTATTTAAGGCAGAG
CTACTATTTCTTTTTTCTTTTCCTTTTCCTTCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTACGACTTGTGATCTTTATTT
ATATGACAGTAGGGAAAACGACTACATATTGATACTCATAAAGCATGAGA
TTAATAATCCTATAGTAAAACCTGACAGAGATTCAATATGCAGAGCGGTG
CTCCTGCCAAGTTTGGATAACAATTAATAGCAAAATTTTCTGAAGTCAAT
GTGTTTTAGAAGATCATAATAATGTATTCATGTGCAAATTCATTTCCAAT
CAAAAGCAGCCAAATATTAAAAATTTTCAAATATTTCAGACCAAATAAAA
TATACCTACTATTGCCTTTTAACTTTGCTTCCACACCTGGGGTAATGTGC
CTTTTATGCACCCCTGGAGGCACAGTGCCTGTTATCATAATGATTTTCTG
TATCTGGCTATACTCTCAGTGAAAGTTTAAAGGACAATCTAACTAACAAT
AGGTGCAAATATCTTCACACTATGCCATGCCATTCAGTTTATTTCTTTGC
ACTGAAACAAAATCTGACCAAGGAGACACAGCCAACTTTCACCTGGACCA
TAATATAAACATATTTGAAAACAGCAGCATGTAGGCTAAACCAGACCCAA
ACAGACTTCTAAACACATGAGAATAGCTCCTTTGCCTTAGATGATTAACA
GCCAATGTGCTCATTCATGTGACAGAAAATATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_a09.b1 MSMg01no288_a09.b1 CHROMAT_FILE:
MSMg01no288_a09.b1 PHD_FILE: MSMg01no288_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:00 2005
         (329 letters)



>mm_chr1_189806196_189806924
          Length = 729

 Score =  565 bits (292), Expect = e-165
 Identities = 316/324 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggggtctacggcacacacagggctatgtctaggggtcaggagtgttgagaag 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggggccgagggcacacacagggctatgtctaggggtcaggagtgttgagaag 264

                                                                       
Query: 65  gggactctggaggccctgtttgaacctgggggatctacatgtgaactgtgagcagacata 124
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggactctggaggcgttgtttgaacctgggggatctacatgtgaactgtgagcagacata 324

                                                                       
Query: 125 gagaaatcactgtaatataaattacccagaccccgaagagcttctaattctctggcaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagaaatcactgtaatataaattacccagaccccgaagagcttctaattctctggcaagt 384

                                                                       
Query: 185 ctctagcactgtcctctctgcagggactctaccctgcttctctggagccactccattttg 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctctagcactgtcctctctgcagggactccaccctgcttctctggagccactccattttg 444

                                                                       
Query: 245 ttggatacgcttgaacggacaagtggtaccaagtatagacaatgacaactcagcattacg 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 445 ttggatacgcttgaacggacaagtggtaccaagtagagacaatgacaactcggcattacg 504

                                   
Query: 305 tttgataatcaatttcttgtacgg 328
           ||||||||||||||||||||||||
Sbjct: 505 tttgataatcaatttcttgtacgg 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no288_a09.g1 MSMg01no288_a09.g1 CHROMAT_FILE:
MSMg01no288_a09.g1 PHD_FILE: MSMg01no288_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:01 2005
         (657 letters)



>mm_chr1_189966843_189967899
          Length = 1057

 Score = 1216 bits (629), Expect = 0.0
 Identities = 650/657 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttacgacttgtgatctttatttatatgacagtagggaaaacgactacatattgatact 60
           |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 857 ttttacgacttgtgatctttatttatgtgacagtagggaaaacgactagatattgatact 798

                                                                       
Query: 61  cataaagcatgagattaataatcctatagtaaaacctgacagagattcaatatgcagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cataaagcatgagattaataatcctatagtaaaacctgacagagattcaatatgcagagc 738

                                                                       
Query: 121 ggtgctcctgccaagtttggataacaattaatagcaaaattttctgaagtcaatgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggtgctcctgccaagtttggataacaattaatagcaaaattttctgaagtcaatgtgttt 678

                                                                       
Query: 181 tagaagatcataataatgtattcatgtgcaaattcatttccaatcaaaagcagccaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tagaagatcataataatgtattcatgtgcaaattcatttccaatcaaaagcagccaaata 618

                                                                       
Query: 241 ttaaaaattttcaaatatttcagaccaaataaaatatacctactattgccttttaacttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttaaaaattttcaaatatttcagaccaaataaaatatacctactattgccttttaacttt 558

                                                                       
Query: 301 gcttccacacctggggtaatgtgccttttatgcacccctggaggcacagtgcctgttatc 360
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 557 gcttccaaacctggggtaatgtgccttttatgcacccctggagggacagtgcctgttatc 498

                                                                       
Query: 361 ataatgattttctgtatctggctatactctcagtgaaagtttaaaggacaatctaactaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ataatgattttctgtatctggctatactctcagtgaaagtttaaaggacaatctaactaa 438

                                                                       
Query: 421 caataggtgcaaatatcttcacactatgccatgccattcagtttatttctttgcactgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caataggtgcaaatatcttcacactatgccatgccattcagtttatttctttgcactgaa 378

                                                                       
Query: 481 acaaaatctgaccaaggagacacagccaactttcacctggaccataatataaacatattt 540
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 377 acaaaatctgaccaaggagacacagccccctttcacctggaccataatataaacatattt 318

                                                                       
Query: 541 gaaaacagcagcatgtaggctaaaccagacccaaacagacttctaaacacatgagaatag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gaaaacagcagcatgtaggctaaaccagacccaaacagacttctaaacacatgagaatag 258

                                                                    
Query: 601 ctcctttgccttagatgattaacagccaatgtgctcattcatgtgacagaaaatatc 657
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctcctttgccttagatgattgacagccaatgtgctcattcatgtgacagaaaatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)