BAC Information

Click to search

BAC

Clone NameMSMg01-288B07
Chromosome1 (Build37)
Map Location 69,027,560 - 69,106,897
singlet/doubletdoublet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288B07.T7 (MSMg01no288_b07.b1)MSMg01-288B07.TJ (MSMg01no288_b07.g1)
ACCAG418003AG418004
length765766
length of high quality
(start - end)		721 (45 - 765)654 (78 - 731)
definitionCHROMAT_FILE: MSMg01no288_b07.b1 PHD_FILE: MSMg01no288_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:05 2005CHROMAT_FILE: MSMg01no288_b07.g1 PHD_FILE: MSMg01no288_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,106,180 - 69,106,897)(69,027,560 - 69,028,213)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATGCATTGGCTCGATTTGGATACCACATTTCAATTATGTTATAGTGTTTT
TGAAGGGGCTTTTACTCTCTTCTCTACTTCTTATTTTCTCTTTAAAGATT
GTATGGTTTTTATAAAAAGGAGATCATATTTGCTTTTTCAAGAGGAATTT
TAGGTGGCAAAAGATTTACATTGCCTTTGCTCCCTGCTTCTGAATTTTCA
ATCTCTGTCTCCAGTATGTCTGCTTGTGAGAGCATGCTGTAACTGGCACA
TTAATTTTTAAAGTGGTACTACAAGAATATGCTTGAAAATGTCTTTGTGG
GCAATATTTGTATCACACAAAGAGTGTTTGTCACTTGGACAGGGACTCTA
TTCAGAAGAACTGTGGAATGGAGACTAGGGTCAGGAAATTTGTACAATCC
ACATTTTAAGTGATTTTTGGAATGTCAATAGTTTTGAATGTTCACATTGC
CGGGGTGAGAAGAGAAATGAAGCATTGTAGCTAAGCTTGTTAGTTTGAGG
AAATCATAGAAGCGGTGAGATATGCTTTCTAAGCACCCCCGATTCTCAAT
AAAAGGAGTAAAATTACCACTAGGCTACAATTTCAGAAAAAGAAAATTCT
AGAAGATGACTTAATAATCATTGGAGTCATGATCTAGTAACCATTTTTAA
AATTGAGCTTGCTAAATACTTTTTGAAGACATTATAAATGATTTATAATT
TATTATCTGCTGGGA

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATGTAAATAAATGGGCTAGTTG
TCCCTGTGAAGAACTGAGTCAAACCCACGTTTGTCTTACTCTAAAACTAT
GCTCTTGACTCTGCTAGTCTACCTATTTCTTGATTTAAAAAATTGACTCT
AGATTAATGTGGAGTTCCTTAATCCATATAGATTTGACCTTAGTACAAGG
AGATAGGAATGAATAGAGGAGAAAGTGGGGAAAGCCTCAAAGATATGGGC
ACAGGGGAAAAATCCTGAATAGAACAGCAATGGCTTGTGTGCTGTAAGAT
CGAGATTCAACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCA
AAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGAT
CTTTACCTATCCTAAATCAGGGGACTAATATCCGATATATATAAAGAACT
CAAGAAGGGGGACTCCAGAAAATCAAATAACCCCATTAAAATAATGGGGC
TCAGAGCTAAACAAAGAATTCTCACCTGAGGAATACCAAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_b07.b1 MSMg01no288_b07.b1 CHROMAT_FILE:
MSMg01no288_b07.b1 PHD_FILE: MSMg01no288_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:05 2005
         (721 letters)



>mm_chr1_69105977_69107097
          Length = 1121

 Score = 1388 bits (718), Expect = 0.0
 Identities = 718/718 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaatgcattggctcgatttggataccacatttcaattatgttatagtgtttttgaaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ggaatgcattggctcgatttggataccacatttcaattatgttatagtgtttttgaaggg 862

                                                                       
Query: 64  gcttttactctcttctctacttcttattttctctttaaagattgtatggtttttataaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gcttttactctcttctctacttcttattttctctttaaagattgtatggtttttataaaa 802

                                                                       
Query: 124 aggagatcatatttgctttttcaagaggaattttaggtggcaaaagatttacattgcctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggagatcatatttgctttttcaagaggaattttaggtggcaaaagatttacattgcctt 742

                                                                       
Query: 184 tgctccctgcttctgaattttcaatctctgtctccagtatgtctgcttgtgagagcatgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctccctgcttctgaattttcaatctctgtctccagtatgtctgcttgtgagagcatgc 682

                                                                       
Query: 244 tgtaactggcacattaatttttaaagtggtactacaagaatatgcttgaaaatgtctttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtaactggcacattaatttttaaagtggtactacaagaatatgcttgaaaatgtctttg 622

                                                                       
Query: 304 tgggcaatatttgtatcacacaaagagtgtttgtcacttggacagggactctattcagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggcaatatttgtatcacacaaagagtgtttgtcacttggacagggactctattcagaa 562

                                                                       
Query: 364 gaactgtggaatggagactagggtcaggaaatttgtacaatccacattttaagtgatttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactgtggaatggagactagggtcaggaaatttgtacaatccacattttaagtgatttt 502

                                                                       
Query: 424 tggaatgtcaatagttttgaatgttcacattgccggggtgagaagagaaatgaagcattg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaatgtcaatagttttgaatgttcacattgccggggtgagaagagaaatgaagcattg 442

                                                                       
Query: 484 tagctaagcttgttagtttgaggaaatcatagaagcggtgagatatgctttctaagcacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctaagcttgttagtttgaggaaatcatagaagcggtgagatatgctttctaagcacc 382

                                                                       
Query: 544 cccgattctcaataaaaggagtaaaattaccactaggctacaatttcagaaaaagaaaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccgattctcaataaaaggagtaaaattaccactaggctacaatttcagaaaaagaaaat 322

                                                                       
Query: 604 tctagaagatgacttaataatcattggagtcatgatctagtaaccatttttaaaattgag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagaagatgacttaataatcattggagtcatgatctagtaaccatttttaaaattgag 262

                                                                     
Query: 664 cttgctaaatactttttgaagacattataaatgatttataatttattatctgctggga 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgctaaatactttttgaagacattataaatgatttataatttattatctgctggga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space:   789921
Effective search space used:   789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no288_b07.g1 MSMg01no288_b07.g1 CHROMAT_FILE:
MSMg01no288_b07.g1 PHD_FILE: MSMg01no288_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:05 2005
         (654 letters)



>mm_chr1_69027360_69028413
          Length = 1054

 Score = 1265 bits (654), Expect = 0.0
 Identities = 654/654 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtaaataaatgggctagttgtccctgtgaagaactgagtcaaacccacgtttgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtaaataaatgggctagttgtccctgtgaagaactgagtcaaacccacgtttgtctt 260

                                                                       
Query: 61  actctaaaactatgctcttgactctgctagtctacctatttcttgatttaaaaaattgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctaaaactatgctcttgactctgctagtctacctatttcttgatttaaaaaattgac 320

                                                                       
Query: 121 tctagattaatgtggagttccttaatccatatagatttgaccttagtacaaggagatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctagattaatgtggagttccttaatccatatagatttgaccttagtacaaggagatagg 380

                                                                       
Query: 181 aatgaatagaggagaaagtggggaaagcctcaaagatatgggcacaggggaaaaatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaatagaggagaaagtggggaaagcctcaaagatatgggcacaggggaaaaatcctg 440

                                                                       
Query: 241 aatagaacagcaatggcttgtgtgctgtaagatcgagattcaacaaatgggacctcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatagaacagcaatggcttgtgtgctgtaagatcgagattcaacaaatgggacctcataa 500

                                                                       
Query: 301 aattgcaaagcttctgcaaggcaaaagacaccgtcaataagacaaaaaggccaccaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattgcaaagcttctgcaaggcaaaagacaccgtcaataagacaaaaaggccaccaacag 560

                                                                       
Query: 361 attgggaaaggatctttacctatcctaaatcaggggactaatatccgatatatataaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgggaaaggatctttacctatcctaaatcaggggactaatatccgatatatataaaga 620

                                                                       
Query: 421 actcaagaagggggactccagaaaatcaaataaccccattaaaataatggggctcagagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcaagaagggggactccagaaaatcaaataaccccattaaaataatggggctcagagc 680

                                                                       
Query: 481 taaacaaagaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaacaaagaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatgtt 740

                                                                       
Query: 541 caacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacac 800

                                                                 
Query: 601 cagtcagaatggctaagataaaaaattcaggtgacagcagatgctggcgaggat 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtcagaatggctaagataaaaaattcaggtgacagcagatgctggcgaggat 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |