BAC Information

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BAC

Clone NameMSMg01-288G23
Chromosome1 (Build37)
Map Location 151,872,425 - 151,872,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G23.T7 (MSMg01no288_g23.b1)MSMg01-288G23.TJ (MSMg01no288_g23.g1)
ACCAG418262AG418263
length764819
length of high quality
(start - end)
189 (127 - 315)157 (124 - 280)
definitionCHROMAT_FILE: MSMg01no288_g23.b1 PHD_FILE: MSMg01no288_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:31 2005CHROMAT_FILE: MSMg01no288_g23.g1 PHD_FILE: MSMg01no288_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
TTTGTTTATCTTCGTACACCATTTTTTTAATAGGGTTATTTGAATTTCTG
GAGTCCACCTTCTTGATCTCTCTGTAATATTGGATATTAGTCCTGTATCA
GGTTTACGATTGGTAAAAATCCTTTCCCAATCGGTTGGTGGGAATTGGTT
TTTGTCTTATTGACAGTGTCTTTTGCCTTGTAGAAGCTTTGCAATTTTAT
GAGGTCTCATTTGTCAATTCTTGATCTTACAGCCTAAGCCATTGCTATTC
TGTTTAGGAATATTTCCCCAGTTGCCCTTATCTTTTAAAAAATTTTTCCC
CCACCTTTTCCCCCCCTAATTTTTTTTTTAACACCCCCCCCCGCCCTTAA
TATGGGAAGGGGGGTGGGGTTCCCCCTTTAAAAACTCCCCCCCTTTTTAT
TAAAAAAAAAAAAAAAAATAATCGGGGGTCTTTGTCCCTCCCTTTTTTCT
TTAAAAAATAAAAAGTCGGGGCACACTCCTTTCTCATTTTCTTCTTCTTT
CTCCCTCCTTTTTTTTTAAAAAAACAAGGTGTTTTCCCTCCTTCTTTTCA
GGGGGGATTGCCTCTTCACTATTCTTCCTCTTTTTTCACCCCCCCCTTAT
TTTCCTCCCTCATTTTTACCCTACCTCCACGGGCGGATAATTTTTTTTTT
CTATCCTCCGCGNCCCCCCCCCCCTTTCTTATCTATTTTTTCTTCTACCT
CTTCCCTCCCCCCC
ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCACACTGATTTTGAGAGTTTGCAATTCCA
CCAACAGTGAACAATGATTCCCTTTTCCCCACAAATCCTTCGGGATCTGT
TGTTAGTAGTTTTGTTGAGTATTACCCTTCTGTTGCAGTGAGATGACCCT
CAGATGGGAATACATTTCTTAGAGGAACTACAGACATCAGGTAAGTAAAA
AGAGACCATTGCTAGGGTCAGAAGTTTGGGGAGCAATTGAGAGGATAACA
GAAGGATATCATGGATCTGATATTAGTAATAGAAAATGGCGGGGGGCGCC
TCTTGTTATTTTTAGGTAATTTCCCCCCCCCCCCCCCATAATATACCCTG
TAAGTCATGTCTTCTATATAGATCCCACGGTTTTACATGCAAATTAAACA
CTTCCCCCCTCTAATTGTGCTGTTTTCTTTTTATTCGACCCATATTTAAA
CCTCCTATTTTACCCTCCAAAATTAAACTATGTGCCCCCCATTCTCCCGG
TATGTAAAACCTTGGCCTCCCCATTCCAAAAAAGCCTTTATATATATCCC
TCCTTTTTATTTAATCACTTTCTCTTTTCAATCGTGTTCCACCATTTTAT
ACCTCCTTTTTTTTTTCTCTTCTCACTTCTCCCCGTCCGTTTTCTCCGCC
CTTTTTTACATCTCGTTTTTATCAGCTATTTGTTCTGTTGCGTTTGTGTT
CATTTTCCTCCTCCCCCCTCTTAACCCCGCTTTCTTTCCTCTCCTTTTTT
CTCCCCCCCGCTCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g23.g1 MSMg01no288_g23.g1 CHROMAT_FILE:
MSMg01no288_g23.g1 PHD_FILE: MSMg01no288_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:31 2005
         (157 letters)



>mm_chr1_151872225_151872781
          Length = 557

 Score =  304 bits (157), Expect = 2e-87
 Identities = 157/157 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccccacaaatccttcgggatctgttgttagtagttttgttgagtattacccttctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccccacaaatccttcgggatctgttgttagtagttttgttgagtattacccttctgt 260

                                                                       
Query: 61  tgcagtgagatgaccctcagatgggaatacatttcttagaggaactacagacatcaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagtgagatgaccctcagatgggaatacatttcttagaggaactacagacatcaggta 320

                                                
Query: 121 agtaaaaagagaccattgctagggtcagaagtttggg 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaaagagaccattgctagggtcagaagtttggg 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)