Query= MSMg01no288_h01.b1 MSMg01no288_h01.b1 CHROMAT_FILE:
MSMg01no288_h01.b1 PHD_FILE: MSMg01no288_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:31 2005
(643 letters)
>mm_chr1_67384737_67385779
Length = 1043
Score = 1180 bits (610), Expect = 0.0
Identities = 633/646 (97%), Gaps = 10/646 (1%)
Strand = Plus / Plus
Query: 1 aaataaaactgtagtaataatatcaatcatgggtaatttataatgtattcccctcctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aaataaaactgtagtaataatatcaatcatgggtaatttataatgtatttttctcctcaa 260
Query: 61 gacatcatttttattcatataccataacagagcctctgtatgcatgtgcaagtatatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatcatttttattcatataccataacagagcctctgtatgcatgtgcaagtatatatg 320
Query: 121 tatatttatatctactaagtgtattgcatatgcatgaatgtatatgtatatataaagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatttatatctactaagtgtattgcatatgcatgaatgtatatgtatatataaagtaa 380
Query: 181 agtaaattatatgttatgaagacattctgtagctacctatgcatacatgtagaaagagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaattatatgttatgaagacattctgtagctacctatgcatacatgtagaaagagtg 440
Query: 241 agagcaggattttt-----agaaaggaatgaatgaaattgtatattcaacataactcctt 295
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagcagga-----gggagagaaaggaatgaatgaaattgtatattcaacataactcctt 495
Query: 296 tgttagaaaaaggaattttctttctggtgaatttgctattttgctatggaaagaatcaac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgttagaaaaaggaattttctttctggtgaatttgctattttgctatggaaagaatcaac 555
Query: 356 aaaactaacatgtttatattaaaatgtatttcattcataatagcttaaagtttggtcaca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaactaacatgtttatattaaaatgtatttcattcataatagcttaaagtttggtcaca 615
Query: 416 cattattttctcacataatatgtcttgattgtggcttctctgctcctcccacttccttcc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cattattttctcacataatatgtcttgattgtggcttctctgctcctcccacttccttcc 675
Query: 476 taactcccctctgatctgaatccattccattaagagtctgagacccactcattcatatac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taactcccctctgatctgaatccattccattaagagtctgagacccactcattcatatac 735
Query: 536 tcaggagtcctgtaaaagcactaactgaagactataatgtatatgttaataaatatgctc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcaggagtcctgtaaaagcactaactgaagactataatgtatatgttaataaatatgctc 795
Query: 596 tgtgcttgctgtttcagtctctgtgagttcatatgaactttgctca 641
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgtgcttgctgtttcagtctctgtgagttcatatgaactttgctca 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_h01.g1 MSMg01no288_h01.g1 CHROMAT_FILE:
MSMg01no288_h01.g1 PHD_FILE: MSMg01no288_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:31 2005
(690 letters)
>mm_chr1_67551769_67552858
Length = 1090
Score = 1334 bits (690), Expect = 0.0
Identities = 690/690 (100%)
Strand = Plus / Minus
Query: 1 agcatacactttttgcccagtggtaattttcttgtctatcattccctagatcccaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 agcatacactttttgcccagtggtaattttcttgtctatcattccctagatcccaaatta 831
Query: 61 gacttatttggctctgtgccagaggatgggtctctaaattataatgacactcaactttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gacttatttggctctgtgccagaggatgggtctctaaattataatgacactcaactttta 771
Query: 121 cacacagcgctgttgaaaataggagctgcaaagctgggcagtgctgcaaagagacaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 cacacagcgctgttgaaaataggagctgcaaagctgggcagtgctgcaaagagacaggca 711
Query: 181 acagatgtagttccaattctggcagggcagcttcaaaactgcacactcaatattaaatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 acagatgtagttccaattctggcagggcagcttcaaaactgcacactcaatattaaatac 651
Query: 241 catttaaaagaatcagatgcacatgaactaccagtgggtggagggaacaggtgtgagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 catttaaaagaatcagatgcacatgaactaccagtgggtggagggaacaggtgtgagaca 591
Query: 301 aagtgattaaaatatttgtaggcatgaatagaaaatggggtgccttttgtaattccagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aagtgattaaaatatttgtaggcatgaatagaaaatggggtgccttttgtaattccagaa 531
Query: 361 aataatttttagtgatttaaatactccaagctctcttcgtgaaggagcagaaacaattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aataatttttagtgatttaaatactccaagctctcttcgtgaaggagcagaaacaattga 471
Query: 421 ccttatggatgtgaacatattttatctaattgtaggttagagttactccacgagtttagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccttatggatgtgaacatattttatctaattgtaggttagagttactccacgagtttagt 411
Query: 481 aataaaacctcacagaatgttccaaaaacataaagcagatgtcaagaggatataaagcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aataaaacctcacagaatgttccaaaaacataaagcagatgtcaagaggatataaagcaa 351
Query: 541 tcttaaaggaataaaatggtgtaattttgagttatcagcagatatggaaagggaatcctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcttaaaggaataaaatggtgtaattttgagttatcagcagatatggaaagggaatcctg 291
Query: 601 gagactgggaaatgtatatttttaagaaaaaaatgatttggtgtaatgaatgtttgcaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagactgggaaatgtatatttttaagaaaaaaatgatttggtgtaatgaatgtttgcaaa 231
Query: 661 agactttataaaagtcttctagaaaaaata 690
||||||||||||||||||||||||||||||
Sbjct: 230 agactttataaaagtcttctagaaaaaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
