Query= MSMg01no289_a04.b1 MSMg01no289_a04.b1 CHROMAT_FILE:
MSMg01no289_a04.b1 PHD_FILE: MSMg01no289_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:14 2005
(305 letters)
>mm_chr1_191942246_191942948
Length = 703
Score = 555 bits (287), Expect = e-162
Identities = 300/305 (98%), Gaps = 4/305 (1%)
Strand = Plus / Minus
Query: 2 aaaacggattcactttttttaaataaccaattcctctgcatat-ggggggaataaagcag 60
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 aaaacggattcac-ttttttaaataaccaattcctctgcatatgggggggaataaagcag 445
Query: 61 tttaaagttgtatattgccacttcaaattgaggggaaaaatttgatgtatttggagttgg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 tttaaagttgtatattgccacttcaaattgaggggaaaaatttaatgtatttggagttgg 385
Query: 121 tctcagatctctaaaagagtcaaaggtcacagcttcccccaacattgtcccagccatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctcagatctctaaaagagtcaaaggtcacagcttcccccaacattgtcccagccatttc 325
Query: 181 tcatatgtatatagtataaaccgtgacaaacactgcctttatattatttagcaatatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatatgtatatagtataaaccgtgacaaacactgcctttatattatttagcaatatgtt 265
Query: 241 gtaaatagcattatgaagctctttttttttgtaataaagaccctatgatttgaatatagt 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaaatagcattatgaagctc--tttttttgtaataaagaccctatgatttgaatatagt 207
Query: 301 acaat 305
|||||
Sbjct: 206 acaat 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 703
Length adjustment: 9
Effective length of query: 296
Effective length of database: 694
Effective search space: 205424
Effective search space used: 205424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_a04.g1 MSMg01no289_a04.g1 CHROMAT_FILE:
MSMg01no289_a04.g1 PHD_FILE: MSMg01no289_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:14 2005
(293 letters)
>mm_chr1_191779563_191780255
Length = 693
Score = 547 bits (283), Expect = e-160
Identities = 289/291 (99%)
Strand = Plus / Plus
Query: 1 ttgcttacattgagttccatgaatatttatcatgatagaaatgaagacagatacattttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcttacattgagttccatgaatatttatcatgatagaaatgaagacagatacattttc 260
Query: 61 taaatacaacaatcgttccaggaaaattcaactctatatagtcattcataataaaaaggg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 taaatacaacaatcgttccaggaaaattcaactctatgtagtcattcataataaaaaggg 320
Query: 121 aagttagaaaggataagtgagtattagcttatgaaaacagttctgcctcaggtgggtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttagaaaggataagtgagtattagcttatgaaaacagttctgcctcaggtgggtgga 380
Query: 181 cattgtttcatggaaataaaaactattaagaagaaagaaaaattggtctgggggaggagt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 cattgtttcatggaaataaaaactattaagaaggaagaaaaattggtctgggggaggagt 440
Query: 241 tagctgttaaagtgttggccttgcaagcataagaattgtagttcagctctc 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagctgttaaagtgttggccttgcaagcataagaattgtagttcagctctc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
